Timeline
Oct 17, 2007:
- 6:23 PM Changeset [2170] by
- Fixes #296. Added reader to show label for labeled extracts
- 6:04 PM Ticket #297 (Add DIGE gel support) closed by
- fixed: (In [2169]) Fixes #297. Added GUI support for running DiGE with …
- 6:04 PM Changeset [2169] by
- Fixes #297. Added GUI support for running DiGE with labeled extracts. …
- 4:31 PM Changeset [2168] by
- Fixes #296. Added GUI support for listing of labeled extracts and …
- 4:31 PM Ticket #296 (Add labeling of extracts to GUI) closed by
- fixed: (In [2168]) Fixes #296. Added GUI support for listing of labeled …
- 4:08 PM Changeset [2167] by
- Refs #287. Refs #291. Labels updated for localization in form for new …
- 2:54 PM Ticket #298 (Add external id to sample forms) created by
- External id can not be set for samples
- 2:12 PM Changeset [2166] by
- Refs #287. Class/file gui/web/GUIConverter.java in client/servlet/ …
- 2:04 PM Ticket #297 (Add DIGE gel support) created by
- It should be possible to add a separation using a DIGE gel using the …
- 2:01 PM Ticket #296 (Add labeling of extracts to GUI) created by
- Add possibility to label extracts to GUI and list labeled extracts.
- 12:53 PM Changeset [2165] by
- Change to go through all compliers. Strange?
- 11:26 AM NamingConventions edited by
- First version of "Naming Conventions" wiki page. (diff)
- 11:19 AM Changeset [2164] by
- Added intermediate action that checks if an existing gel has been …
- 11:02 AM Changeset [2163] by
- Added state diagram showing the creation of separation events.
- 10:43 AM Tickets #265,288 batch updated by
- fixed: (In [2162]) Fixes #265. Fixes #288. Refs #286. Added gel scan event …
- 10:43 AM Changeset [2162] by
- Fixes #265. Fixes #288. Refs #286. Added gel scan event with image …
- 9:55 AM TableFactoryUse edited by
- Section "Getter Method Name" updated. Added note on column key strings … (diff)
- 9:26 AM Changeset [2161] by
- Fixed spelling of debug.mode
- 9:13 AM Changeset [2160] by
- Added debug.mode property to proteios.config.in If this property is …
- 8:57 AM Changeset [2159] by
- Removed some of the warnings in form factory
- 8:51 AM Developers edited by
- Added link to page with naming conventions. (diff)
- 8:49 AM NamingConventions created by
- Initial skeleton of page.
Oct 16, 2007:
- 4:53 PM Changeset [2158] by
- Removed unused import
- 4:53 PM Changeset [2157] by
- Refs #291. Refs #287. Refs #280. Hit class updated in names of some …
- 4:52 PM Changeset [2156] by
- Refs #265. Refs #286. Corrected addition of gel stain events.
- 4:38 PM Changeset [2155] by
- Refs #286 Added view of active staining event
- 4:34 PM Ticket #283 (Add possiblitiy for direct file - sample links) closed by
- fixed: The functionality has been added to the database and to the sample form.
- 4:32 PM Changeset [2154] by
- Refs #265. Refs #286. Added functional addition of gel scan to gel …
- 3:42 PM Changeset [2153] by
- Refs #283. Added possibility to add file annotations to active sample
- 3:07 PM Changeset [2152] by
- Refs #287. English localization dictionary file locale/en/dictionary …
- 2:46 PM Changeset [2151] by
- Refs #265. Populating more fields
- 2:44 PM Changeset [2150] by
- Refs #265. Saving all parameters for gel generated by new separation event
- 2:33 PM Changeset [2149] by
- Refs #287. English localization dictionary file locale/en/dictionary …
- 12:45 PM Changeset [2148] by
- Refs #291. Refs #287. Key strings for text fields and table columns …
- 12:20 PM Changeset [2147] by
- Refs #280. Refs #291. Test classes/files updated to comply with …
- 11:35 AM Changeset [2146] by
- Refs #291. Refs #287. Refs #280. Update of accessor method names for …
- 11:19 AM GelBasedReport edited by
- (diff)
- 11:02 AM WorkingWithFiles edited by
- (diff)
- 9:52 AM Changeset [2145] by
- Refs #283. Added biomaterial-file association table. Added possiblitiy …
- 9:41 AM Changeset [2144] by
- Refs #291. Refs #287. Names of some getter and setter methods updated …
- 9:17 AM Changeset [2143] by
- Replaced uggly line comments to block comments.
- 9:03 AM Changeset [2142] by
- Removing all but one warning from ftpd package during compilation with …
- 8:46 AM Changeset [2141] by
- Fixed problem with WAF tests not compiling correctly when using …
Oct 15, 2007:
- 4:42 PM Changeset [2140] by
- Fixes #294. Made Mass-[start|end] parameters required.
- 4:42 PM Ticket #294 (AddGel complains about nondefault fields) closed by
- fixed: (In [2140]) Fixes #294. Made Mass-[start|end] parameters required.
- 4:29 PM Changeset [2139] by
- Fixing problem with instances of BioMaterial? in ViewBioMaterial? action.
- 4:14 PM Ticket #295 (Select available gel for separation event) created by
- Gels that are generated from Gels list or from Hits report are not …
- 4:02 PM Changeset [2138] by
- Refs #265. Sorted columns in list gels. ViewBioMaterial? class added to …
- 2:35 PM Changeset [2137] by
- Refs #265. Using column action for listGels to avoid problems
- 2:03 PM Ticket #293 (AddGel complains about nondefault fields) closed by
- duplicate: See #294
- 2:03 PM Ticket #294 (AddGel complains about nondefault fields) created by
- Mass start and Mass end fields are optional but AddGel action …
- 2:00 PM Ticket #293 (AddGel complains about nondefault fields) created by
- Mass start and Mass end fields are optional but AddGel? action …
- 1:39 PM Changeset [2136] by
- Refs #292. Added ViewCreationEvent? now displays default fields of a …
- 1:16 PM Ticket #292 (Clicking on a Creation event should display information about the event) created by
- Used and created biomaterials should be listed
- 1:07 PM Ticket #289 (Exception when adding new events and there are no existing protocols) closed by
- fixed
- 1:07 PM Changeset [2135] by
- When creating protocols from files using the CreateProtocolFromFile? …
- 11:55 AM Changeset [2134] by
- Refs #287. Localization support added for Hits columns "Mw" and "Pi". …
- 11:19 AM Ticket #291 (Add units to method calls) created by
- Methods such as getSize(), getWeight() should be renamed as …
- 10:11 AM Changeset [2133] by
- Refs #287. Length of IPG strip
- 10:09 AM Changeset [2132] by
- Refs #286. Added length to IPG. Corrected saving of event date
- 10:00 AM Changeset [2131] by
- Parameterized Columns removing warninigs.
- 9:56 AM Changeset [2130] by
- Text cursor when hovering over disabled menu items.
- 9:52 AM Changeset [2129] by
- Cursor switches to hand when hovering over tabs.
- 9:49 AM Changeset [2128] by
- Refs #265. Saving sizeX and sizeY fields for new gel
- 9:14 AM Ticket #224 (Allow sample - gel linking) closed by
- duplicate
- 9:06 AM Changeset [2127] by
- Refs #287. English localization dictionary file locale/en/dictionary …
Oct 13, 2007:
- 7:54 AM Changeset [2126] by
- Changed reference of base.config to proteios.config file in error message.
Oct 12, 2007:
- 4:03 PM Changeset [2125] by
- Refs #265. Populating fields
- 3:59 PM Changeset [2124] by
- Refs #265. Refs #287. Added fields for all functions to gel form. …
- 3:17 PM Changeset [2123] by
- Refs #287. The path had to be forward slash for resource on windows
- 2:56 PM Changeset [2122] by
- Refs #265. All events in one table. toolbar button for new staining events.
- 2:51 PM Changeset [2121] by
- Refs #287. English localization dictionary file locale/en/dictionary …
- 2:20 PM Changeset [2120] by
- Refs #288. Initial revision of New/SaveStainingEvent?.
- 1:30 PM Changeset [2119] by
- Refs #287. Improved the warning message when keys are missing translations.
- 1:07 PM Changeset [2118] by
- Refs #289. Adding SeparationEvents? now works even if you do not have …
- 12:45 PM Changeset [2117] by
- Resf #290. Changed the stylesheet so that column titles have the same …
- 12:42 PM Changeset [2116] by
- Refs #273. Updated getSharedParent to avoid problem with permissions …
- 12:12 PM Changeset [2115] by
- Refs #273. Updated gui classes according to previous commit.
- 12:10 PM Changeset [2114] by
- Refs #273. Moved association separationmethod-biomaterialevent up to …
- 12:09 PM Changeset [2113] by
- Refs #287. Refs #285. Removed localization from TableFactory?, i.e. no …
- 11:28 AM Changeset [2112] by
- Refs #290. Removed current icon mappings as they where only for testing.
- 11:24 AM Changeset [2111] by
- Refs #290. Icons are now displayable next to buttons. I've styled the …
- 10:50 AM Ticket #290 (Show icons next to buttons) created by
- 9:41 AM Changeset [2110] by
- Fixes #255.
- 9:41 AM Ticket #255 (Clickable rows should be highlighted) closed by
- fixed: (In [2110]) Fixes #255.
- 8:21 AM Changeset [2109] by
- Refs #265. Added toolbar with new scan event
- 8:14 AM Changeset [2108] by
- Refs #279. Added protocol type for gel staining. Also removed unused …
Oct 11, 2007:
- 10:00 PM Ticket #277 (Protocol GUI) closed by
- fixed
- 9:58 PM Ticket #285 (GUIConverter initialization should be centralized in the ActionFactory) closed by
- fixed: That last comment was ment to be for ticket #287.
- 9:53 PM Changeset [2107] by
- Refs #285. Removed localization from ViewLeft? action.
- 9:14 PM Changeset [2106] by
- Moved localization to GUIConverter and HTMLFactory. All localization …
- 8:00 PM Ticket #289 (Exception when adding new events and there are no existing protocols) created by
- It's not possible to add an event without any protocols.
- 7:58 PM Ticket #288 (Add staining event for GelElectrophoresis) created by
-
Enable users to add staining events for
extractsGelElectrophoresis?. - 7:57 PM Ticket #287 (Labels and headers should display the correct english localization) created by
- In some places there is no localized value. Enter these values in the …
- 4:59 PM Changeset [2105] by
- Refs #265 Gel scan events and clickable rows for biomaterials and …
- 4:51 PM Changeset [2104] by
- Refs #279. Added Protocol types for scanning and separation
- 3:56 PM Changeset [2103] by
- Refs #280. JUnit test setup class/file …
- 1:29 PM Changeset [2102] by
- Refs #286. GelScanEvents? can now be added. They cannot be viewed yet. …
- 1:19 PM Changeset [2101] by
- Refs #280. JUnit test setup class/file …
- 12:59 PM Ticket #279 (Select protocol when creating an event) closed by
- fixed: (In [2100]) Fixes #279, and refs #286. Protocols are now selectable …
- 12:59 PM Changeset [2100] by
- Fixes #279, and refs #286. Protocols are now selectable when creating …
- 11:56 AM Changeset [2099] by
- Refs #280. Directory org/proteios/apptestsetup in plugin/test/ …
- 11:19 AM Changeset [2098] by
- Refs #277. Creating protocols is now possible when viewing files by …
- 10:58 AM Changeset [2097] by
- Refs #280. JUnit test setup class/file …
- 8:45 AM Changeset [2096] by
- Refs #280. JUnit test setup class/file io/ApplicationTestSetup.java in …
Oct 10, 2007:
- 4:45 PM Changeset [2095] by
- Refs #280. JUnit test setup class/file …
- 4:21 PM Changeset [2094] by
- Refs #280. Classes/files performing JUnit test setup updated to first …
- 2:45 PM Ticket #284 (VDate validation does not work) closed by
- fixed: (In [2093]) Fixes #284, and refs #286
- 2:45 PM Changeset [2093] by
- Fixes #284, and refs #286
- 2:31 PM Ticket #286 (Adding/Viewing events) created by
- Events handling is incomplete. Fields are missing and not all events …
- 11:30 AM Changeset [2092] by
- Refs #273. Added getters to item classes. Refs#265. Added …
Oct 9, 2007:
- 2:08 PM Changeset [2091] by
- Refs #280. Class/file plugins/mzdata/TestMzDataExportPlugin.java in …
- 1:50 PM Changeset [2090] by
- Refs #280. Class/file io/mzdata/TestMzDataExporterOnly.java in …
- 11:49 AM Changeset [2089] by
- Refs #280. Directory core/TestEnvironmentSetup.java in api/core/test/ …
- 9:06 AM Changeset [2088] by
- Removed log level dependency for action id generation. Action ids are …
Oct 8, 2007:
- 12:36 PM Changeset [2087] by
- Refs #280. Class/file io/mzdata/TestMzDataExporterOnly.java in …
Oct 5, 2007:
- 3:38 PM Changeset [2086] by
- Refs #280. Classes/files io/TestFilenameParseUtil.java and …
- 3:07 PM Changeset [2085] by
- Refs #280. Tests of mzData import and export plugins now placed in …
- 1:34 PM Ticket #285 (GUIConverter initialization should be centralized in the ActionFactory) created by
- The LayoutFactory should supply each layout with a GUIConverter. We …
- 12:51 PM Ticket #284 (VDate validation does not work) created by
- Format validation of date fields does not work. Only length of the …
- 9:51 AM Ticket #283 (Add possiblitiy for direct file - sample links) created by
- It should be possible to set direct links between samples …
- 9:13 AM Ticket #282 (Move localization to GUIConverter) created by
- Having the localization centralized in the GUIConverter would make our …
- 8:58 AM Ticket #281 (Fix problems with JUnit tests) closed by
- duplicate: Ticket closed as it is an exact duplicate of Ticket #280, created by …
- 8:54 AM Ticket #281 (Fix problems with JUnit tests) created by
- Some JUnit tests fail, often in connection with validation of XML …
- 8:46 AM Ticket #280 (Fix problems with JUnit tests) created by
- Some JUnit tests fail, often in connection with validation of XML …
- 8:11 AM Ticket #279 (Select protocol when creating an event) created by
- Enable users to select a protocol when creating an event. Split from …
Oct 4, 2007:
- 10:33 PM Milestone 2.0 beta 2 completed
- 2:18 PM Changeset [2084] by
- Tagging proteios 2.0 beta 2 release
- 1:48 PM Installation edited by
- Added missing enclosing apostrophes for user entries in example. (diff)
- 1:39 PM Changeset [2083] by
- Changing version to 2.0-beta2
- 1:39 PM Installation edited by
- Wiki formatting fixed for user entries in example. (diff)
- 1:27 PM Installation edited by
- Added question on updating the database to installation example. (diff)
- 1:02 PM Ticket #278 (Update Windows installation script to work without an existing database) closed by
- fixed: Ticket closed as the desired functionality has been added.
- 12:59 PM Changeset [2082] by
- Refs #278. Windows installation script install-win.bat in …
- 12:52 PM Ticket #278 (Update Windows installation script to work without an existing database) created by
- The Windows installation script should be updated to work without an …
- 11:19 AM Changeset [2081] by
- Installation failed when not having an existing database. Windows …
- 11:15 AM Changeset [2080] by
- Refs #265. The sourceMaterial is now set as the source in the …
Oct 3, 2007:
- 4:08 PM Changeset [2079] by
- Added piStart and piEnd fields when viewing IPG.
- 3:00 PM Changeset [2078] by
- Added externalId and denaturatingAgent fields when viewing …
- 1:26 PM Changeset [2077] by
- Commented constructors and some of the methods, explaining the …
- 9:26 AM Changeset [2076] by
- Added proteinAssay and solubilizationBuffer fields to Gel form.
- 7:53 AM Changeset [2075] by
- Changed info message to debug message when creating messages.
- 7:40 AM Changeset [2074] by
- Reexposing gels below active project menu.
Oct 2, 2007:
- 2:46 PM JavaDoc edited by
- (diff)
- 2:40 PM Ticket #126 (Decide default settings for template file log4j.properties.in.) closed by
- fixed: (In [2073]) Fixes #126. log4j.properties.in is now configured to hide …
- 2:40 PM Changeset [2073] by
- Fixes #126. log4j.properties.in is now configured to hide all debug …
- 2:35 PM Changeset [2072] by
- Refs #248. CV term for masslynx raw folder added
- 1:57 PM Ticket #261 (Auto generate javadoc for access through wiki) closed by
- fixed: Go to the JavaDoc page for easy access. The documentation points to …
- 1:55 PM Developers edited by
- Added link to javadoc (diff)
- 1:55 PM JavaDoc created by
- Initial revision of javadoc index page
- 12:07 PM Changeset [2071] by
- Refs #265. Extract management updated to check for null or other …
- 11:44 AM Changeset [2070] by
- Refs #181. Initial action classes/files for the three steps in the …
- 11:19 AM Changeset [2069] by
- Refs #273. Removed redundant getProtocolUsed functions, since …
- 10:26 AM Changeset [2068] by
- Refs #273. Removed getProtocolUsed from separationEvent, since there …
- 10:21 AM Changeset [2067] by
- Refs #265. Ref#273. Correction to quantity calculation. Added used …
- 9:26 AM Changeset [2066] by
- Refs #248. Updated converter to produce mzML 0.99.0 peak lists. Also …
Oct 1, 2007:
- 3:48 PM Ticket #260 (Document use of table factory) closed by
- worksforme: Ticket closed as the desired document has been created, describing the …
- 3:43 PM Ticket #274 (Clicking on Spectrum in Hits Report may give Null-Pointer Exception) closed by
- worksforme: Ticket closed as the known causes leading to a null-pointer exception …
- 3:42 PM Changeset [2065] by
- Selecting columns and entering filter data now works, though nothing …
- 3:39 PM Ticket #272 (It should be possible to hide Selection Checkbox Column in TableFactory) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 3:37 PM Ticket #230 (Filtering column string contents should allow some wild cards) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 1:58 PM Changeset [2064] by
- Refs #265. Refs #273. Corrected setSource method to set single biomaterial
- 12:25 PM Changeset [2063] by
- Refs #265. Used quantity and event date added for separation events
- 12:08 PM Ticket #277 (Protocol GUI) created by
- It should be possible to add new protocols in the GUI. Each protocol …
- 11:58 AM Changeset [2062] by
- Refs #265. Added more possible separation methods to form. Default …
- 11:51 AM Problems edited by
- (diff)
- 11:50 AM Problems edited by
- (diff)
- 11:49 AM Problems edited by
- Added solution to not-null problem (diff)
- 11:42 AM Problems created by
- 11:26 AM Manual edited by
- (diff)
- 11:20 AM Changeset [2061] by
- Users can now show columns that are hidden by default.
Sep 28, 2007:
- 2:24 PM Changeset [2060] by
- Changed configure() method in factories to several polymorphic methods.
- 1:16 PM Changeset [2059] by
- Hiding columns works. Though default hidden columns can never be shown.
- 12:05 PM Changeset [2058] by
- Refs #265. Extract generation updated to give used sample quantity
- 11:47 AM Changeset [2057] by
- Refs #273. Updating of remaining quantity corrected
- 11:12 AM Changeset [2056] by
- Merging trunk changes rev 2044-2054
- 11:03 AM Changeset [2055] by
- Added ConfigTemplate? to use when we need to get a table configuration …
- 10:25 AM Changeset [2054] by
- Refs #273. Updated core functions for checking allowed sources. Refs …
- 9:42 AM Changeset [2053] by
- Fixed event error output even though nothing went wrong. Missing …
- 9:39 AM Ticket #273 (Events linking) closed by
- fixed: (In [2052]) Fixes #273. Corrected permissions for creation events. …
- 9:39 AM Changeset [2052] by
- Fixes #273. Corrected permissions for creation events. Added source …
- 9:28 AM Changeset [2051] by
- Enabled configuration of factories. Also restricted number of chained …
Sep 27, 2007:
- 6:23 PM Changeset [2050] by
- Table now shows form for selecting visible columns.
- 5:17 PM Changeset [2049] by
- Initial revision of TableFactory2 and FormFactory2. Also added some …
- 5:16 PM Changeset [2048] by
- Added logger for TableFactory2
- 4:55 PM Changeset [2047] by
- Refs #173. Refs #230. Classes/files action/setFilter2.java and …
- 2:51 PM Changeset [2046] by
- Refs #273. Major change is addition of a separate column for creation …
- 12:27 PM Changeset [2045] by
- Refs #173. Refs #230. Class/file gui/form/FromFactory.java in …
- 12:07 PM Changeset [2044] by
- Trying to create a generic set of actions for creating, viewing, …
- 10:47 AM Changeset [2043] by
- Refs #173. Class/file action/SetFilter2.java in client/servlet/ …
Sep 26, 2007:
- 2:03 PM Installation edited by
- Added database host name to installation example. (diff)
- 1:10 PM Changeset [2042] by
- Refs #181. File selection in hits wizard is now by default in project …
- 12:40 PM Changeset [2041] by
- Refs #274. Code updated to avoid null pointer exception when clicking …
- 11:30 AM Changeset [2040] by
- Initial revision of a few event viewing actions. GUI is missing.
- 11:30 AM Changeset [2039] by
- Changing sample quantity unit to MicroLiter?. TODO The samples need a …
- 11:28 AM Changeset [2038] by
- Hiding the table configuration icon alltogether if the popuplink does …
- 11:03 AM Ticket #275 (Hide column ValuesVersion in TableFactory) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 11:01 AM Ticket #270 (File/Directory Table is Distorted/Incomplete) closed by
- worksforme: Ticket closed as the described problem has been fixed.
- 10:06 AM Changeset [2037] by
- Commented fields in proteios.AbstractLink?
- 9:32 AM Changeset [2036] by
- Improved error handling for undefined items in the Item class. Also …
- 8:35 AM Changeset [2035] by
- Fixed visible table configuration icon even though there is no GUI to …
Sep 25, 2007:
- 5:09 PM Changeset [2034] by
- Removed some more plugin warnings
- 5:04 PM Changeset [2033] by
- Got rid of warnings in plugins
- 4:59 PM Changeset [2032] by
- Removed warning in DataProcessingStep?
- 4:50 PM Changeset [2031] by
- Removed warnings in data classes
- 4:41 PM Changeset [2030] by
- Refs #123. Corrected generation of bidirectional links which resulted …
- 4:33 PM Changeset [2029] by
- Refs #271. Install script for unix/linux misc/install/linux-install.sh …
- 4:15 PM Changeset [2028] by
- Added FIXME on a large duplicate code section.
- 4:00 PM Changeset [2027] by
- Added FIXME comment for strange looking code section.
- 3:50 PM Changeset [2026] by
- Removing warnings in gui.web.GUIConverter
- 3:49 PM Changeset [2025] by
- Removing warnings in action.extract.AddPooledExtract?
- 3:48 PM Ticket #276 (Filter value in TableFactory should be checked against variable type) created by
- Filter value in TableFactory should be checked against variable type. …
- 3:48 PM Changeset [2024] by
- Removing warnings in action.extract.AddExtract?
- 3:47 PM Changeset [2023] by
- Removing warnings in action.gel.NewGel?
- 3:47 PM Changeset [2022] by
- Removing warnings in action.file.MoveFile2
- 3:43 PM Changeset [2021] by
- Removing warnings in action.hit.ListHits?
- 3:42 PM Changeset [2020] by
- Removing warnings in action.hit.SaveInFileHitsStep1
- 3:41 PM Changeset [2019] by
- Refs #275. Class/file gui/table/TableFactory.java in client/servlet/ …
- 3:41 PM Changeset [2018] by
- Removing warnings in action.hit.SaveInFileHitsStep2
- 3:35 PM Changeset [2017] by
- Removing warnings in action.gel.ViewGelOrNewGel?
- 3:35 PM Changeset [2016] by
- Removing warnings in gui.form.FormUtil?
- 3:09 PM Changeset [2015] by
- Removing warnings in action.events.NewSeparationEvent?
- 3:08 PM Changeset [2014] by
- Removing warnings in action.SetSortColumn?
- 3:07 PM Changeset [2013] by
- Removing warnings in action.SetFilter1
- 3:05 PM Changeset [2012] by
- Removing warnings in action.SetFilter2
- 2:57 PM Changeset [2011] by
- Removing warnings in tui.table.Table
- 2:56 PM Changeset [2010] by
- Removing warnings in TableFactory?
- 2:38 PM Changeset [2009] by
- Removing unused code in XsdToTagFactory?.
- 2:35 PM Changeset [2008] by
- Added TODO for removing unused code in MzDataImpDescriptionBlock?.
- 2:34 PM Changeset [2007] by
- Added TODO for removing unused code in MzDataImpMzDataBlock?.
- 2:23 PM Changeset [2006] by
- Removing warning of unread parameter 'numParameters'
- 2:20 PM Changeset [2005] by
- Removed warning of unused parameter 'int'
- 2:13 PM Changeset [2004] by
- Refs #273. Updated itemfactory to use new method
- 1:56 PM Ticket #275 (Hide column ValuesVersion in TableFactory) created by
- Class TableFactory should by default hide column ValuesVersion.
- 1:45 PM Changeset [2003] by
- Refs #274. Class/file gui/form/FormFactory.java in client/servlet/ …
- 1:41 PM Changeset [2002] by
- Added GUI to enable table configuration. Just needs actual …
- 1:33 PM Ticket #274 (Clicking on Spectrum in Hits Report may give Null-Pointer Exception) created by
- Clicking on Spectrum in Hits Report may give Null-Pointer exception, …
- 12:43 PM Changeset [2001] by
- Refs #273. BioMaterialEvent? is now abstract. A new CreationEvent? …
- 12:41 PM Ticket #273 (Events linking) created by
- The event types and linking with biomaterials need to be sorted out
- 12:36 PM Changeset [2000] by
- Refs #230. Classes/files action/SetFilter1.java and …
- 11:34 AM Ticket #167 (Implement results browsing) closed by
- fixed: (In [1999]) Fixes #167. Added observed modifications and removed …
- 11:34 AM Changeset [1999] by
- Fixes #167. Added observed modifications and removed repeats of …
- 10:40 AM Changeset [1998] by
- One warning less
- 10:37 AM Changeset [1997] by
- Refs #129. Score type for matched peptides added (even if no score is …
- 10:35 AM Changeset [1996] by
- Refs #167. Added spectrum plot to peptide view
Sep 24, 2007:
- 5:29 PM Changeset [1995] by
- Added referenced peptides to Protein result view
- 5:28 PM Changeset [1994] by
- Refs #167. Added helper functions to searchresult. added referenced …
- 3:34 PM Changeset [1993] by
- Refs #230. Refs #232. TableFactory? updated to transfer filter values …
- 3:18 PM Changeset [1992] by
- Refs #248. Some changes in PLGS to mzML converter to get less errors …
- 1:45 PM Changeset [1991] by
- Refs #129. Added name to spectrumSearch
- 11:30 AM Changeset [1990] by
- Initial revision of ViewEvent? and ViewActiveSeparationEvent?. They are …
- 11:16 AM Ticket #254 (Table generated with TableFactory is not complete) closed by
- worksforme: Ticket closed as TableFactory now creates columns for variables of …
- 10:35 AM Changeset [1989] by
- 9:24 AM Changeset [1988] by
- Column EventType? is now properly generated for BioMaterialEvents?.
Sep 21, 2007:
- 2:17 PM Ticket #271 (Update installation scripts to allow db on different host) closed by
- fixed
- 2:16 PM MySQLremote edited by
- Fixes #271 (diff)
- 2:12 PM MySQLremote created by
- 2:05 PM Installation edited by
- Instructions for remote database (diff)
- 12:47 PM Changeset [1987] by
- Refs #248. Added instrumentSoftwareRef.
- 10:31 AM TableFactoryUse edited by
- Section "Extensions to Generic Table Creation" renamed "Modifications … (diff)
- 9:11 AM TableFactoryUse edited by
- Section "Example" changed to "Example of Use" and title part re-written. (diff)
Sep 20, 2007:
- 4:52 PM TableFactoryUse edited by
- Section "Remove Initial Checkbox Column" updated for new functionality. (diff)
- 4:38 PM Changeset [1986] by
- Refs #272. Refs #260. Class/file gui/table/TableFactory.java in …
- 2:43 PM Changeset [1985] by
- Refs #271. The install script should not use -h if localhost specified
- 2:42 PM Changeset [1984] by
- Refs #271. Updated install scripts and config files to support …
- 1:28 PM Changeset [1983] by
- Refs #254. Class/file gui/table/TableFactory.java in client/servlet/ …
- 12:23 PM Ticket #272 (It should be possible to hide Selection Checkbox Column in TableFactory) created by
- It should be possible to hide Selection Checkbox Column in …
- 11:10 AM Ticket #271 (Update installation scripts to allow db on different host) created by
- The current installation scripts do not allow the database to be on a …
- 9:49 AM Changeset [1982] by
- Refs #263. Updated event classes to use the same column for the …
- 9:49 AM Ticket #269 (Hide columns Used, Version, InDatabase, Detached, Removed) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 9:44 AM Changeset [1981] by
- Refs #270. Class/file gui/table/TableFactory.java in client/servlet …
- 9:35 AM Changeset [1980] by
- Refs #270. Code updated to make consistency of combined file/directory …
- 9:17 AM Changeset [1979] by
- Commented the Loader.list() method.
Sep 19, 2007:
- 4:11 PM Changeset [1978] by
- Refs #263. Fields in table-per-class subclasses can not contain …
- 3:45 PM Changeset [1977] by
- Initial revision of ClassMetadataExposed? class. DatabaseExceptions? …
- 2:45 PM Changeset [1976] by
- Refs #254. Class/file gui/table/TableFactory.java in client/servlet/ …
- 2:33 PM Changeset [1975] by
- Refs #270. Class/file action/directory/ViewActiveDirectory.java in …
- 1:32 PM Changeset [1974] by
- Adding hibernate-properties-MeasuredBioMaterialData?.xml as stated in …
- 1:28 PM Changeset [1973] by
- Reverted hibernate-properties-MeasuredBioMaterialData?.xml for creation …
- 1:25 PM Changeset [1972] by
- Refs #270. Refs #254. Class/file …
- 11:18 AM TableFactoryUse edited by
- Minor additions for clarity in section on Post-Modification of Tables. … (diff)
- 10:12 AM TableFactoryUse edited by
- Caution note added on dependencies between tables, the source classes, … (diff)
- 9:42 AM BuildProteios edited by
- Step by step retrieving and building the source code (diff)
Sep 18, 2007:
- 4:26 PM Changeset [1971] by
- Refs #209. Changed plugin types to Analysis since nothing is imported.
- 4:21 PM Changeset [1970] by
- Refs #209. Now also enabled include list generation for singlet ions
- 2:35 PM Changeset [1969] by
- Refs #270. Refs #254. Refs #269. Code updated to make file/directory …
- 2:25 PM Changeset [1968] by
- Fixing nullpointer exception when trying to update extracts. Removed …
- 8:10 AM Ticket #270 (File/Directory Table is Distorted/Incomplete) created by
- When viewing directories and files the values for directories seem to …
Sep 17, 2007:
- 4:36 PM Changeset [1967] by
- Adding several missing localized labels
- 4:23 PM Changeset [1966] by
- Refs #269. Class/file gui/table/TableFactory.java in client/servlet/ …
- 3:59 PM TableFactoryUse edited by
- Moved initial selection checkbox item in bullet list, in order to have … (diff)
- 3:53 PM TableFactoryUse edited by
- Modified description of Data Rows. (diff)
- 3:37 PM TableFactoryUse edited by
- Added more info on user-selected sorting. (diff)
- 3:36 PM Changeset [1965] by
- Added support for table factory to show event types. E.g. for …
- 3:20 PM TableFactoryUse edited by
- Added note on incompatibility of user-selected filtering and removal … (diff)
- 3:12 PM Changeset [1964] by
- Refs #123. Changed types in item class to Float from float to reflect …
- 3:06 PM TableFactoryUse edited by
- Added section "Examples of Extensions to Generic Table Creation", (diff)
- 3:03 PM Ticket #269 (Hide columns Used, Version, InDatabase, Detached, Removed) created by
- Class TableFactory should by default hide columns Used, Version, …
- 2:37 PM Ticket #264 (Extract view) closed by
- fixed
- 2:36 PM Ticket #267 (ViewActiveSample should only list extracts done from the selected sample) closed by
- fixed: (In [1963]) Fixes #267.
- 2:36 PM Changeset [1963] by
- Fixes #267.
- 2:11 PM TableFactoryUse edited by
- Added first part of new section "Extensions to Generic Table Creation". (diff)
- 2:01 PM Changeset [1962] by
- Initial revision of AddPooledExtract? and NewPooledExtract? actions.
- 1:59 PM Changeset [1961] by
- Added quantity localizations
- 1:58 PM Changeset [1960] by
- Removed duplicate code for Sample and Extracts. Also localized micro …
- 1:49 PM Ticket #249 (Enhance import of Mascot Search results) closed by
- fixed: The modification masses are not read, since the files containing these …
- 1:25 PM Ticket #263 (Connect Scan-, Image- and StaingingEvents to GelElectrophoresis data) closed by
- fixed
- 1:22 PM Changeset [1959] by
- Refs #167. Now sorting peptide and proteins by Evalue.
- 1:00 PM Ticket #268 (Creating an Extract from a Sample generates a ClassCast exception) closed by
- wontfix: Error in uncommited code.
- 12:53 PM TableFactoryUse edited by
- Added note on inital selection checkbox column. (diff)
- 12:48 PM Ticket #268 (Creating an Extract from a Sample generates a ClassCast exception) created by
- […]
- 12:30 PM Ticket #267 (ViewActiveSample should only list extracts done from the selected sample) created by
- Currently all extracts are shown
- 12:09 PM TableFactoryUse edited by
- Added section on elements of created table. (diff)
- 11:53 AM TableFactoryUse edited by
- Section "Requirements for Generic Table Creation with TableFactory" … (diff)
- 11:38 AM TableFactoryUse edited by
- Added note on generic Column creation. (diff)
- 11:29 AM Changeset [1958] by
- Refs #188. Removed import button from Hits. Batch conversion of files …
- 11:27 AM Changeset [1957] by
- Refs #179. Null pointer exception when no retention time fixed. …
- 11:24 AM Changeset [1956] by
- Refs #188. Updated conversion plugins to be of CONVERT type
- 11:24 AM Changeset [1955] by
- Refs #188. Added plugin type CONVERT. The install java class will now …
- 11:22 AM Ticket #266 (Used quantity is negative for extracts) created by
- 10:33 AM TableFactoryUse edited by
- Note on table title creation added. (diff)
- 10:05 AM TableFactoryUse edited by
- Added first version of example code for use of TableFactory. (diff)
- 9:11 AM TableFactoryUse edited by
- Re-phrasing description of generically created columns. (diff)
- 9:09 AM Ticket #233 (Extensions popup not visible when file list is very long) closed by
- fixed: Tested in Firefox 1.5 and IE7
- 9:08 AM TableFactoryUse edited by
- Added note on Scroller addition to Table. (diff)
- 8:46 AM TableFactoryUse created by
- First stub of TableFactoryUse wiki page.
- 7:47 AM Developers edited by
- Added link to TableFactoryUse wiki page. (diff)
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