Timeline
Feb 4, 2009:
- 4:48 PM Changeset [3081] by
- Fixes #495. Renamed iTRAQ label to specify the type. Report seems to …
- 4:48 PM Ticket #495 (Isobaric label support) closed by
- fixed: (In [3081]) Fixes #495. Renamed iTRAQ label to specify the type. …
- 1:18 PM Changeset [3080] by
- Refs #405. Added XSD for pride protocol element
- 1:10 PM Ticket #509 (install script should reuse information when updating) closed by
- fixed: Ticket closed as the requested functionality has been added.
- 1:04 PM Update edited by
- Added notes on running update script and rerunning installation script. (diff)
- 9:26 AM Ticket #510 (ant dist target) closed by
- fixed: (In [3079]) Fixes #510. Tried doing a ant Package compress and then …
- 9:26 AM Changeset [3079] by
- Fixes #510. Tried doing a ant Package compress and then install the …
Feb 3, 2009:
- 5:04 PM Ticket #507 (View action for hits should use a table instead of generic form) closed by
- fixed: Ticket closed, as the desired functionality has been added. …
- 9:43 AM Changeset [3078] by
- Refs #502. Unit Ontology was not properly named
- 9:42 AM Changeset [3077] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
Feb 2, 2009:
- 4:18 PM Changeset [3076] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 2:06 PM Changeset [3075] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 1:19 PM Changeset [3074] by
- Refs #405. Writing score types that are not in the Pride CV as userParams
- 11:26 AM Changeset [3073] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
Jan 30, 2009:
- 11:36 AM Changeset [3072] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
Jan 29, 2009:
- 2:59 PM Changeset [3071] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 12:58 PM Changeset [3070] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 10:04 AM Changeset [3069] by
- Refs #483. Removed compilation warnings
- 9:46 AM Changeset [3068] by
- Fixes #500. Report was fully functional. Removed compilation warnings.
- 9:46 AM Ticket #500 (Allow selection of score types to combine in combined hits report) closed by
- fixed: (In [3068]) Fixes #500. Report was fully functional. Removed …
Jan 28, 2009:
- 4:36 PM Changeset [3067] by
- Fixes #502. Presumably the converters are now finally at 1.1.0.
- 4:36 PM Ticket #502 (Upgrade mzML converters to 1.1.0) closed by
- fixed: (In [3067]) Fixes #502. Presumably the converters are now finally at 1.1.0.
- 12:29 PM Ticket #510 (ant dist target) created by
- The ant dist target(s) should be removed, since it generates .class …
- 12:22 PM Changeset [3066] by
- Refs #495, refs #484. Writing out spectrum ids in report, to allow for …
- 11:51 AM Changeset [3065] by
- Refs #484. Printing out peak list file name.
- 10:51 AM Changeset [3064] by
- Refs #495, refs #484. New protein hits that are generated by the …
Jan 27, 2009:
- 4:21 PM Changeset [3063] by
- Refs #394. Refs #502. Updated mzML reader to mzML 1.1.0
- 2:44 PM Ticket #503 (MGF spectrum id problem) closed by
- fixed
- 10:51 AM Changeset [3062] by
- Refs #495. Corrected bug introduced when running without labels. Also …
- 9:42 AM MoreAboutProteios edited by
- (diff)
- 7:57 AM Changeset [3061] by
- Refs #509. First revision of scripts to update database, when …
Jan 26, 2009:
- 4:46 PM Changeset [3060] by
- Refs #495, refs #484. Not allowing gel external ids to be wrongly set …
- 4:37 PM Changeset [3059] by
- Refs #495, refs #484. Corrected protein assembly when merging entries
- 3:08 PM Changeset [3058] by
- Refs #495. Corrected protein assembly to support multiple files (hopefully)
- 2:26 PM Changeset [3057] by
- Refs #495. Further edited debug info.
- 2:08 PM Changeset [3056] by
- Refs #495. Edited debug output.
- 11:55 AM Changeset [3055] by
- Refs #392. Improved error reporting when file registering fails
- 11:54 AM Changeset [3054] by
- Refs #407. Support for MGF files with no decimals in m/z column.
- 11:30 AM Changeset [3053] by
- Refs #363. Allowing longer string for modifications, to allow multiple …
- 11:23 AM Changeset [3052] by
- Refs #407. Support for MGF files with more than one whitespace char …
- 8:22 AM Ticket #509 (install script should reuse information when updating) created by
- The install script does not check for already existing config files. …
Jan 23, 2009:
- 11:33 AM Ticket #508 (Check installation and update procedure) created by
- Is it possible to have a separate update script that doesn't require …
Jan 22, 2009:
- 5:40 PM Changeset [3051] by
- Refs #495. Added possibility to select isobaric labels to protein …
- 5:38 PM Changeset [3050] by
- Refs #500. Refs #163. Clearing hit fdr info before generating a new …
- 4:47 PM Changeset [3049] by
- Refs #502. Adjustments of cvParams
- 11:03 AM Changeset [3048] by
- Refs #500. Refs #163. Support of allowing selection of score types to …
- 10:05 AM Changeset [3047] by
- Refs #502. Updated mzML converters to preliminary 1.1.0.
Jan 21, 2009:
- 4:21 PM Changeset [3046] by
- Refs #500. Refs #163. Refs #287. First support of allowing selection …
Jan 20, 2009:
- 1:31 PM Changeset [3045] by
- Refs #492. Fixed average rt calculation
- 1:26 PM Changeset [3044] by
- Refs #492. Revised to avoid nested exclusion points.
Jan 19, 2009:
- 1:18 PM Changeset [3043] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 9:47 AM Changeset [3042] by
- Removed file that was added by mistake
- 9:44 AM Changeset [3041] by
- Refs #492. Updated Xcalibur formatted exclusion lists to contain …
Jan 16, 2009:
- 2:29 PM Changeset [3040] by
- Refs #506. Corrected icon link
- 2:23 PM Ticket #506 (Handling of gel scan file) closed by
- fixed: (In [3039]) Fixes #506. Added possibility to view image file for gel …
- 2:23 PM Changeset [3039] by
- Fixes #506. Added possibility to view image file for gel scan event
- 1:31 PM Changeset [3038] by
- Refs #507. Class/file action/hit/ViewActionHit.java in client/servlet/ …
- 12:54 PM Changeset [3037] by
- Refs #507. Refs #178. Class/file action/hit/ViewActionHit.java in …
- 12:26 PM Ticket #507 (View action for hits should use a table instead of generic form) created by
- View action for hits should use a table instead of generic form, as …
- 12:01 PM Changeset [3036] by
- Refs #506. Added possibility to change image file for gel scan event
- 12:01 PM Ticket #506 (Handling of gel scan file) created by
- It should be possible to change file associated with a gel scan if the …
Jan 14, 2009:
- 4:34 PM Changeset [3035] by
- Refs #405. Refs #287. PRIDE XML export is updated to allow a local …
- 9:24 AM GelBasedReport edited by
- (diff)
Jan 13, 2009:
- 4:37 PM Changeset [3034] by
- Refs #499. Generated schema now links foreign key columns.
- 3:46 PM Developers edited by
- Added link to generated_schema.html to developer documentation (diff)
- 3:10 PM Changeset [3033] by
- Refs #499. The magic draw diagrams shows class relationsships. Making …
- 2:21 PM Changeset [3032] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 2:07 PM Changeset [3031] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 12:55 PM Changeset [3030] by
- PDM code validator showed a few warnings, tied it out on ViewActiveSample?
- 11:04 AM Changeset [3029] by
- Refs #499. Removed dublicate Removable interface
- 9:40 AM Ticket #498 (Usage permission checking of biomaterials) closed by
- fixed: I believe this issue is resolved. However there exists an issue with …
- 9:36 AM Ticket #505 (Upgrade external svn libs) closed by
- fixed
- 8:54 AM Changeset [3028] by
- Refs #498. Refactored private method, using more descriptive …
Jan 12, 2009:
- 4:45 PM Changeset [3027] by
- Refs #498. Refactoring ViewActiveSample? by splitting up gui creation …
- 3:02 PM Changeset [3026] by
- Refs #498. Methods related to creating an extract from a sample now …
- 1:28 PM Changeset [3025] by
- Refs #505. Changed svn task definition in main build.xml
- 1:25 PM Changeset [3024] by
- Refs #505. Upgraded to svnant-1.2.1 from …
- 1:22 PM Ticket #505 (Upgrade external svn libs) created by
- So they work with latest svn client and eclipse
- 1:14 PM SomeConceptsInProteios edited by
- Included the concepts diagram (diff)
Jan 9, 2009:
- 4:13 PM Changeset [3023] by
- Refs #405. Refs #287. The PRIDE XML version number displayed in the …
- 11:13 AM Changeset [3022] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
Jan 8, 2009:
- 11:05 AM Changeset [3021] by
- Refs #405. Class/file plugins/PrideExportPlugin.java in plugin/ …
- 8:29 AM Changeset [3020] by
- Refs #494. Refs #480. Refs #404. Fix that restores possibility of …
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