Timeline



May 5, 2009:

5:16 PM Ticket #548 (Integration of MyriMatch search engine) created by Fredrik Levander
The MyriMatch
5:13 PM Ticket #516 (project files showed as shared) closed by Fredrik Levander
fixed: Should have been fixed with ticket #457.
12:30 PM Ticket #539 (Display item id in forms) closed by Gregory Vincic
fixed: Specific form generation methods in the FormFactory? should be …
12:26 PM Changeset [3260] by Gregory Vincic
Removing compile warnings
11:44 AM Changeset [3259] by Gregory Vincic
Refs #539. getForm(Class, Object) displays the itemId as a disabled field.
11:32 AM Changeset [3258] by Gregory Vincic
Added URI to dictionary and removed a debug println statement from File.
11:24 AM Ticket #231 (Rewrite the QuickImport plugin as an extension) closed by Gregory Vincic
wontfix: The plugin will be removed instead.
11:23 AM Changeset [3257] by Gregory Vincic
Fixes #546. Removed concurency problems. Tested with test no. 8
11:23 AM Ticket #546 (Concurrency bug in webservice) closed by Gregory Vincic
fixed: (In [3257]) Fixes #546. Removed concurency problems. Tested with test no. 8
11:06 AM Changeset [3256] by Gregory Vincic
Adding test 7 to target 'all'
11:04 AM Ticket #547 (Select Project list too long) created by Gregory Vincic
All accessible projects are available in the File->Select Project list …
10:58 AM Ticket #444 (Enable uploading of files through webservice PUT method) closed by Gregory Vincic
fixed: This already works, some issues reference the #366 ticket.
10:57 AM Ticket #366 (External file support) closed by Gregory Vincic
fixed: http:// protocol works with and without basic authentication. file://
10:56 AM Changeset [3255] by Gregory Vincic
Refs #366. URI with basic authentication works.
10:52 AM Changeset [3254] by Gregory Vincic
Refs #366. Using hello.txt file in test.
10:17 AM Changeset [3253] by Gregory Vincic
Refs #366. File form displays the URI and downloading a non …
7:44 AM Ticket #515 (Editing of sample and contact info in mzData and mzML files) closed by olle
fixed: Ticket closed as the desired functionality has been added.

May 4, 2009:

11:06 AM Changeset [3252] by olle
Refs #526. Class/file io/OMSSAParameterSetOptionsUtil.java in …
9:35 AM Changeset [3251] by Fredrik Levander
Refs #502. Updated URIs for source files i converters. Updated mzML …
9:34 AM Releases edited by Fredrik Levander
updated links (diff)

Apr 30, 2009:

1:38 PM Ticket #529 (Project directory not shared to project) closed by olle
fixed: Ticket closed, since the implemented solution should solve the most …
12:28 PM Changeset [3250] by olle
Refs #529. Plug-ins modified to check for permission USE instead of …
11:21 AM Changeset [3249] by olle
Refs #536. Class/file io/MzMLFileReader.java in api/core/ updated to …
11:02 AM Changeset [3248] by olle
Refs #536. Class/file io/MzMLFileReader.java in api/core/ updated to …

Apr 29, 2009:

3:36 PM Ticket #517 (job queues) closed by olle
fixed: Ticket closed as the desired functionality has been added.
1:41 PM Changeset [3247] by Fredrik Levander
Refs #545. Allowing retention time lookups in mzML-based search …
12:01 PM Changeset [3246] by olle
Refs #515. Support for editing of sample and contact information in …

Apr 28, 2009:

2:31 PM Changeset [3245] by Gregory Vincic
Refs #366. Fixing test for modifying filename.
2:15 PM Changeset [3244] by Gregory Vincic
Refs #366. Added test for renaming a file.
1:41 PM FollowingAJob edited by olle
Section Name updated by changing header to a class of lower level, as … (diff)
1:12 PM SiteMap edited by olle
SiteMap updated with new entry FollowingAJob under UserGuide (diff)
1:08 PM UserGuide edited by olle
Section Activities updated with link to new wiki page FollowingAJob. (diff)
1:02 PM FollowingAJob created by olle
First revision of wiki page FollowingAJob.
9:23 AM Changeset [3243] by Gregory Vincic
Refs #366. Working test for disallowed protocol file://
8:43 AM Changeset [3242] by Gregory Vincic
Refs #546. File upload test works. Also started on testing the …

Apr 27, 2009:

4:47 PM Changeset [3241] by olle
Refs #515. Support for editing of contact information in mzData …
3:48 PM Changeset [3240] by olle
Refs #515. Support for editing of sample information in mzData …
3:04 PM Changeset [3239] by olle
Refs #515. Support for editing of sample information in mxML spectrum …
2:17 PM Changeset [3238] by Gregory Vincic
Refs #546. Moving getAttributes(...) method out of RequestData?.
2:12 PM Changeset [3237] by Gregory Vincic
Refs #546. Removing method isValidResource() from RequestData?.
2:10 PM Changeset [3236] by Gregory Vincic
Refs #546. Removing wrappermethod getParameter(...) in RequestData?.
2:03 PM Changeset [3235] by Gregory Vincic
Moving parsePath(...) and getClass(...) methods from RequestData?.
1:55 PM Changeset [3234] by Gregory Vincic
Refs #546. Moving home into RequestData?.
1:53 PM Changeset [3233] by Gregory Vincic
Refs #546. Moving activeProject into RequestData?.
1:52 PM Changeset [3232] by Gregory Vincic
Refs #546. Moving item into RequestData?.
1:48 PM Changeset [3231] by Gregory Vincic
Refs #546. Moving ClassDescriptor? into RequestData?.
1:43 PM Changeset [3230] by Gregory Vincic
Refs #546. Moving ItemFactory? into RequestData?.
1:42 PM Changeset [3229] by Gregory Vincic
Refs #546. Moving DbControl? into RequestData?.
1:39 PM Changeset [3228] by Gregory Vincic
Refs #546. Moving SessionControl? into RequestData?
1:33 PM Changeset [3227] by Gregory Vincic
Refs #546. Making user an attribute of RequestData?
1:24 PM Changeset [3226] by Gregory Vincic
Refs #546. Making data a local variable of each method.
1:19 PM Changeset [3225] by Gregory Vincic
Refs #546. Started rewriting webservice. Making RequestData? a value …
1:15 PM Ticket #546 (Concurrency bug in webservice) created by Gregory Vincic
The current implementation of the webservice does not allow for …
1:00 PM Changeset [3224] by olle
Refs #536. Class/file io/MzMLFileReader.java in api/core/ updated to …
12:37 PM Changeset [3223] by Gregory Vincic
Refs #366. Constraining UniformResourceIdentifier? protocol to http:// only

Apr 24, 2009:

3:00 PM Changeset [3222] by olle
Refs #515. Support for editing of contact information in mxML spectrum …
2:36 PM Changeset [3221] by Fredrik Levander
Refs #545. Very basic support for import of mzML-based Tandem searches
2:35 PM Ticket #545 (Allow mzML as source files in Hits report) created by Fredrik Levander
As search engines become capable of using mzML as source files it …
11:53 AM Changeset [3220] by olle
Refs #515. Support for editing of contact information in mzData and …
11:07 AM Changeset [3219] by Gregory Vincic
Refs #366. Initial revision of webservice tests.
9:57 AM Changeset [3218] by olle
Refs #515. Support for editing of sample and contact information in …

Apr 22, 2009:

9:15 AM Changeset [3217] by Gregory Vincic
Icons in PopupLinks? are now aligned to the left when converted to …

Apr 20, 2009:

4:37 PM Changeset [3216] by olle
Refs #517. Refs #287. Support for putting selected jobs into a high …
11:07 AM Ticket #544 (Execute external binaries as a plugin) created by Gregory Vincic
Doing this could solve the problem of killing jobs that have long …

Apr 17, 2009:

2:02 PM MoreAboutProteios edited by Fredrik Levander
(diff)
1:27 PM Changeset [3215] by olle
Refs #526. Class/file io/OMSSAParameterSetOptionsUtil.java in …
9:44 AM Changeset [3214] by olle
Refs #517. Refs #287. Update intended to clarify job queue …

Apr 16, 2009:

4:40 PM Changeset [3213] by olle
Refs #517. Refs #287. Job table page updated to show the number of …
11:21 AM Ticket #518 (Cancel jobs) closed by olle
fixed: Ticket closed as the desired functionality has been added.
11:17 AM Changeset [3212] by olle
Refs #518. Refs #517. Jobs whose execution were stopped by shutdown of …

Apr 14, 2009:

1:33 PM MoreAboutProteios edited by Fredrik Levander
Added references (diff)
11:45 AM Ticket #543 (Mascot Search Results Importer should not throw exception if ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
11:40 AM Changeset [3211] by olle
Refs #543. Refs #140. Class/file plugins/SearchResultsImporter.java in …
11:22 AM Ticket #543 (Mascot Search Results Importer should not throw exception if ...) created by olle
Mascot Search Results Importer should not throw exception if …
9:28 AM Ticket #542 (List of Proteios Extensions Wiki Pages) closed by olle
fixed: Ticket closed as the desired functionality has been added. …
9:14 AM Ticket #542 (List of Proteios Extensions Wiki Pages) created by olle
To facilitate navigation of Proteios Extensions wiki, a wiki page …

Apr 9, 2009:

12:43 PM Ticket #541 (Easter Egg - Protein 3D Structure as View Action for Proteins in Hits Table) closed by olle
fixed: Ticket closed as the desired functionality has been added. As noted in …
11:04 AM Changeset [3210] by olle
Refs #541. First version of view action for Protein cell in Hits …
10:03 AM Ticket #541 (Easter Egg - Protein 3D Structure as View Action for Proteins in Hits Table) created by olle
Ultimately, all interesting features of proteins, except as a simple …
9:54 AM WebservicePutExamples edited by Gregory Vincic
Added security note on the external file support (diff)
9:43 AM WebservicePutExamples edited by Gregory Vincic
Documenting how to register files using the webservice (diff)
9:11 AM Changeset [3209] by Gregory Vincic
Removing unused logo
8:59 AM Changeset [3208] by Gregory Vincic
Archive link is now sorted, also renamed Trac to Development
8:48 AM Changeset [3207] by Gregory Vincic
Reverting fredriks bazaar commit 3202

Apr 8, 2009:

4:08 PM Ticket #540 (Peaklist file cell in Hits table should have view action for ...) closed by olle
fixed: Ticket closed as the desired functionality has been added.
2:56 PM Changeset [3206] by olle
Refs #540. Refs #507. First version of view action for Peaklist file …
1:37 PM Ticket #540 (Peaklist file cell in Hits table should have view action for ...) created by olle
Peaklist file cell in Hits table should have view action for …

Apr 7, 2009:

4:40 PM Ticket #536 (Spectrum file info) closed by olle
fixed: Ticket closed as the desired functionality has been added.
1:10 PM Changeset [3205] by olle
Refs #515. Refs #287. First version of support for editing of sample …
11:17 AM Changeset [3204] by olle
Refs #515. New XML writer interface and implementation class: 1. New …

Apr 6, 2009:

1:03 PM Ticket #499 (Update UML diagrams) closed by Gregory Vincic
fixed: No more updates for now.
1:02 PM Ticket #521 (Bitbock integration) closed by Gregory Vincic
fixed: Closing this ticket as the External file support is now inplace and …
8:34 AM Webservice edited by Gregory Vincic
(diff)
8:32 AM WebserviceDeleteExamples created by Gregory Vincic
Initial revision
8:31 AM WebservicePostExamples created by Gregory Vincic
Initial revision
8:30 AM WebservicePutExamples edited by Gregory Vincic
(diff)
8:29 AM WebservicePutExamples created by Gregory Vincic
Initial revision
8:28 AM WebserviceGetExamples created by Gregory Vincic
Initial revision
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