Timeline
Jul 10, 2009:
- 4:54 PM Changeset [3363] by
- Refs #595. Class/file core/Application.java in api/core/ updated by …
- 4:52 PM Changeset [3362] by
- Refs #595. Changes committed in changeset …
- 4:40 PM Changeset [3361] by
- Refs #595. Class/file core/Application.java in api/core/ updated by …
- 4:32 PM Changeset [3360] by
- Refs #595. Proteios SE version specification extended with an optional …
- 3:58 PM Changeset [3359] by
- Bumping minor revision to 9
- 3:11 PM ServerAdministration edited by
- (diff)
- 3:11 PM ServerAdministration edited by
- (diff)
- 2:58 PM Changeset [3358] by
- Fixing rounding problem in db2html.pl
- 2:38 PM Changeset [3357] by
- Updateing generated_schema after 2.8.0 release
- 2:32 PM Milestone Proteios SE 2.8 completed
- * Protein and peptide identification comparisons. * More search …
- 1:55 PM Changeset [3356] by
- Tagging 2.8.0 release
- 1:38 PM Changeset [3355] by
- Refs #463. Refs #565. Classes/files core/Project.java and …
- 12:40 PM Ticket #598 (Deletion of items such as a gel) created by
- I have many gels named test, test2, testwhatever and I'd like to …
- 9:02 AM Ticket #535 (Comparison of Hits reports) closed by
- fixed: Ticket closed as the the core features of hits comparison have been …
- 8:47 AM Ticket #565 (Possible to generate search parameters in read-only project) closed by
- fixed: Ticket closed as package private method `void initPermissions(int …
Jul 8, 2009:
- 3:28 PM Changeset [3354] by
- Refs #535. Class/file plugins/HitsComparisonReportPlugin.java in …
- 1:35 PM Ticket #597 (Directory and files inaccesible) created by
- User A creates project P1 and adds user B to the project with full …
- 1:24 PM Ticket #584 (Improved parsing of fraction id in non-gel import) closed by
- fixed: Worked fine in tests
- 11:48 AM Changeset [3353] by
- Refs #555. Added local sample id to default non-gel hits view.
Jul 7, 2009:
- 2:57 PM Changeset [3352] by
- Refs #535. Class/file gui/form/FormFactory.java in client/servlet/ …
- 2:09 PM Ticket #596 (Allow admin to list active users) created by
- Administrators should be able to view which users are currently logged in.
- 12:44 PM Changeset [3351] by
- Refs #535. Refs #287. Support for hits comparison updated with protein …
- 8:43 AM Changeset [3350] by
- Refs #535. Class/file plugins/HitsComparisonReportPlugin.java in …
Jul 6, 2009:
- 1:44 PM Changeset [3349] by
- Refs #535. Refs #287. Support for hits comparison updated: 1. …
- 1:31 PM Changeset [3348] by
- Refs #535. Class/file action/hit/HitsComparisonReportStep1.java in …
Jul 3, 2009:
- 3:11 PM Changeset [3347] by
- Refs #552. Avoiding null pointer exception in case spectrum id is null
- 2:41 PM Changeset [3346] by
- Fixes #552. Spectrum string id is now shown in hits properties with …
- 2:41 PM Ticket #552 (Preferential use of spectrum ids as string) closed by
- fixed: (In [3346]) Fixes #552. Spectrum string id is now shown in hits …
- 2:04 PM Ticket #595 (Pre-release version) created by
- It would be good if the trunk version could have a version indicating …
- 2:03 PM Ticket #590 (Directories inaccessible) closed by
- fixed: More tests also successful
- 2:01 PM Ticket #534 (Mascot GUI) closed by
- fixed
- 2:00 PM Ticket #550 (Propagation of random hits) closed by
- fixed: Random hits are now also updated in the hits list to get combined FDR. …
- 1:51 PM Changeset [3345] by
- Refs #552. Updates to GUI for spectrum string id.
- 1:50 PM Changeset [3344] by
- Refs #550. Added keep random to dictionary
- 1:10 PM Changeset [3343] by
- Refs #535. Refs #287. Support for comparison of hits report updated by …
- 12:38 PM Changeset [3342] by
- Refs #535. Refs #287. Support for comparison of hits report updated by …
- 12:07 PM Changeset [3341] by
- Refs #535. Refs #287. Support for comparison of hits report updated by …
- 10:42 AM Ticket #594 (Update hibernate lib) created by
- 10:29 AM Ticket #571 (Automatic sharing to projects does not work) closed by
- worksforme
- 9:26 AM Ticket #593 (batch sample import) created by
- It should be possible to import samples / extracts, and annotations …
- 9:26 AM Changeset [3340] by
- Fixed login link on proteios.org
- 9:18 AM Ticket #592 (zoom in spectra) created by
- It would be nice if it was possible to zoom in spectra. A possiblity …
- 9:00 AM Ticket #555 (Alternate default columns in Hits report) closed by
- fixed: (In [3339]) Fixes #555. Filtering is working properly. Also added …
- 9:00 AM Changeset [3339] by
- Fixes #555. Filtering is working properly. Also added protein/peptide …
- 8:54 AM Ticket #591 (Workflow for using mzData files with OMSSA) created by
- OMSSA does not support mzData files for searching. To enable usage of …
Jul 2, 2009:
- 10:51 AM Changeset [3338] by
- Refs #590. Refs #241. Class/file …
Jul 1, 2009:
- 4:20 PM Changeset [3337] by
- Refs #565. Class/file core/Directory.java in api/core/ updated with …
- 3:33 PM Ticket #545 (Allow mzML as source files in Hits report) closed by
- fixed: Working with limited testing, since only X!Tandem available for testing.
- 2:38 PM Changeset [3336] by
- Refs #535. Changed initial query to find selectable projects so that …
- 12:08 PM Changeset [3335] by
- Fixes #589. Fixes #551. Added possibility to limit protein assembly by …
- 12:08 PM Tickets #551,589 batch updated by
- fixed: (In [3335]) Fixes #589. Fixes #551. Added possibility to limit protein …
- 10:47 AM Changeset [3334] by
- Refs #589. Further refactoring to avoid problems with too long …
- 9:08 AM Changeset [3333] by
- Refs #589. Refactoring of Protein Assembly. Solving duplication …
- 9:06 AM Ticket #586 (Protein grouping repeats the same protein) closed by
- duplicate: See #589
Jun 30, 2009:
- 1:20 PM Ticket #526 (Not all OMSSA modifications shown) closed by
- fixed: Ticket closed as a solution has been implemented for default OMSSA …
- 12:47 PM Changeset [3332] by
- Refs #526. Refs #471. Class/file gui/form/FormFactory.java in …
- 12:27 PM Changeset [3331] by
- Refs #584. Refs #392. Non-gel import updated to make parsing of …
- 9:57 AM Ticket #590 (Directories inaccessible) created by
- When there is more than 20 subdirectories, those after 20 are not …
- 8:53 AM Ticket #589 (Protein assembly sometimes repeats the same protein) created by
- When running Protein Assembly (#495 , #484) there is sometimes a …
Jun 29, 2009:
- 4:46 PM Changeset [3330] by
- Refs #129. Modified accession number parsing to split at pipe
- 1:38 PM FAQ edited by
- (diff)
- 1:34 PM KnownIssuesProteios edited by
- (diff)
- 1:33 PM KnownIssuesProteios edited by
- (diff)
- 1:30 PM FAQ edited by
- (diff)
- 1:20 PM Changeset [3329] by
- Refs #565. Class/file core/Directory.java in api/core/ updated for a …
- 12:26 PM Changeset [3328] by
- Refs #587. Making query a bit more robust in case database column …
Jun 26, 2009:
- 4:41 PM Ticket #580 (Clear hits removes more than hits ... all my spots where removed!) closed by
- fixed: Ticket closed as the desired changes in button label and warning text …
- 4:37 PM Changeset [3327] by
- Refs #580. Refs #187. Refs #287. Text of button to clear the Hits …
- 9:44 AM Changeset [3326] by
- Refs #463. Refs #565. Classes/files core/Project.java and …
Jun 24, 2009:
- 12:39 PM Changeset [3325] by
- Refs #584. Refs #287. Non-gel import updated to check length of …
- 11:07 AM Changeset [3324] by
- Refs #584. Class/file core/Hit.java and related data class/file …
Jun 23, 2009:
- 9:47 AM Changeset [3323] by
- Refs #535. Class/file plugins/HitsComparisonReportPlugin.java in …
Jun 22, 2009:
- 4:26 PM Changeset [3322] by
- Refs #471. Refs #526. Class/file io/OMSSAParameterFileUtil.java in …
- 2:35 PM Changeset [3321] by
- Refs #535. Refs #287. Refs #290. First revision of support for …
- 1:49 PM Changeset [3320] by
- Refs #535. Api/core updated to simplify database query for unique …
Jun 17, 2009:
- 2:12 PM Changeset [3319] by
- Refs #588. Fixing first couple of steps. Having trouble with the …
- 1:41 PM Ticket #588 (Start Here wizard forms show the menu) created by
- Each step of the Start Here wizard shows the menu if the user hits …
- 1:19 PM Changeset [3318] by
- Moved description to the right as it's likely that users do not want …
- 11:56 AM Changeset [3317] by
- Fixes #587. Menu listing and Home view now hide all closed projects.
- 11:56 AM Ticket #587 (Close projects) closed by
- fixed: (In [3317]) Fixes #587. Menu listing and Home view now hide all closed …
- 11:43 AM Changeset [3316] by
- Refs #587. Users can now close a project though it does not affect any …
- 11:24 AM Changeset [3315] by
- Refs #587. Adding closed column to ProjectData?
- 11:22 AM Ticket #587 (Close projects) created by
- Closed projects could be filtered out, moved to other locations or …
- 10:47 AM Changeset [3314] by
- Refs #555. Hit filters are now changed accordingly to type of project.
- 9:36 AM Changeset [3313] by
- Refs #555. Adding ProjectType? to database so we can decide when to use …
Jun 16, 2009:
- 2:17 PM Changeset [3312] by
- Refs #555. Default columns for the hits view are now defined in the …
Jun 15, 2009:
- 9:48 AM Ticket #562 (The 2D gel wizard asks me to click on the 'Update' button to monitor ...) closed by
- fixed: Ticket closed as the described problem has been fixed. If undesired …
Jun 12, 2009:
- 10:04 AM Ticket #586 (Protein grouping repeats the same protein) created by
- When generating a Protein report from peptides of two LC-MS/MS files …
- 8:55 AM ServerAdministration edited by
- (diff)
Jun 11, 2009:
- 2:52 PM Ticket #585 (Deletion of entire project) created by
- Users of Proteios sometimes want to restart from the beginning with …
- 1:28 PM Changeset [3311] by
- Refs #526. Refs #471. Class/file gui/form/FormFactory.java in …
- 12:30 PM Ticket #564 (Not possible to share search settings to another user) closed by
- fixed: Ticket closed as the described problem seems to be fixed.
- 11:47 AM Changeset [3310] by
- Refs #564. Refs #471. Listing of OMSSA parameter set storage items …
- 11:24 AM Changeset [3309] by
- Refs #564. Refs #534. Listing of Mascot parameter set storage items …
- 7:53 AM Ticket #583 (Non-gel pride export failing) closed by
- fixed: Ticket closed as the problem described seems to be fixed. If the …
Jun 10, 2009:
- 5:41 PM Changeset [3308] by
- Refs #405. Clarified non-gel export filtering in form.
- 5:11 PM Ticket #584 (Improved parsing of fraction id in non-gel import) created by
- Currently the fraction id is parsed from file names as the last part …
- 2:09 PM Changeset [3307] by
- Refs #583. Refs #405. Class/file plugins/PrideExportPlugin.java in …
- 11:55 AM Changeset [3306] by
- Refs #163. Added more peptide info to combined hits report
- 11:23 AM Ticket #558 (Windows installation script exits before last message can be read) closed by
- fixed: Ticket closed as the desired functionality has been added.
- 11:20 AM Changeset [3305] by
- Refs #558. Installation script for Windows updated to not exit when …
- 10:27 AM Ticket #583 (Non-gel pride export failing) created by
- When running the PRIDE export on a large LC-MS/MS file, the jobs …
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