Timeline



Oct 12, 2009:

12:15 PM KnownIssuesProteios edited by Fredrik Levander
(diff)
11:43 AM Releases edited by olle
Some typos fixed. (diff)
11:09 AM Changeset [3440] by Gregory Vincic
Bumping minor version and changing VERSION_MARKER to dev
11:08 AM Changeset [3439] by Gregory Vincic
Updating recipe version
11:02 AM KnownIssuesProteios edited by Fredrik Levander
(diff)
11:02 AM Ticket #617 (Warning message when installing or upgrading) created by Fredrik Levander
When running the installation script the following message is seen: …
11:00 AM KnownIssuesProteios edited by Fredrik Levander
(diff)
10:59 AM KnownIssuesProteios edited by Fredrik Levander
(diff)
10:58 AM Milestone Proteios SE 2.9 completed
10:58 AM ReleaseProcedure edited by Gregory Vincic
Updating link to roadmap (diff)
10:57 AM Releases edited by Fredrik Levander
Release 2.9 (diff)
9:51 AM Changeset [3438] by Gregory Vincic
Renaming version from 2.9 to 2.9.0
9:29 AM Changeset [3437] by Gregory Vincic
Tagging 2.9 release
9:27 AM ReleaseProcedure edited by Gregory Vincic
When creating apackage the source from tagged version should be … (diff)
9:25 AM Changeset [3436] by Gregory Vincic
Removing version marker prior to 2.9 release
8:52 AM ReleaseProcedure edited by Gregory Vincic
Adding section Repository Final Changes (diff)
8:44 AM Ticket #440 (Redesign FormFactory) closed by Gregory Vincic
fixed: The design for forms and their creation is done, though implementation …

Oct 9, 2009:

1:54 PM Ticket #611 (Problems with spectrum viewer when many spectra) closed by olle
fixed: Ticket closed as the spectrum list table now is page-managed, when the …
1:52 PM Ticket #609 (Spectrum peaks displayed as wide) closed by olle
fixed: Ticket closed again as the displayed mass range now includes entered …
1:48 PM Ticket #593 (batch sample import) closed by olle
fixed: Ticket closed as a first version of BioMaterial batch import has been …
9:51 AM batch_import_example_03_sample_extract_labeled_extract_import_with_internal_identifier_column.txt attached to BatchImportOfBioMaterialItems by olle
Batch import input file for example 3.
9:50 AM batch_import_example_02_sample_extract_labeled_extract_import_with_extra_identifier_column.txt attached to BatchImportOfBioMaterialItems by olle
Batch import input file for example 2.
9:49 AM batch_import_example_01_sample_import_only.txt attached to BatchImportOfBioMaterialItems by olle
Batch import input file for example 1.

Oct 7, 2009:

1:09 PM Changeset [3435] by olle
Refs #600. Refs #541. Class/file action/hit/ViewActiveHitPDBFile.java …
8:22 AM Changeset [3434] by olle
Refs #425. Refs #404. Refs #480. Trimming of header for spectrum plot …

Oct 6, 2009:

4:35 PM Changeset [3433] by olle
Refs #611. Refs #616. Refs #540. Refs #592. Inspection of mass spectra …

Oct 5, 2009:

5:16 PM Changeset [3432] by Fredrik Levander
Refs #614. Corrected proton mass
3:47 PM Changeset [3431] by Gregory Vincic
Refs #569. Initial revision of the RequestHandler?. Also included …
12:40 PM Changeset [3430] by Gregory Vincic
Refs #569. Moved operator and value checking into createFilter(...) method.
9:23 AM Changeset [3429] by Gregory Vincic
Refs #569. Refactored out code into private method createFilter(...). …

Oct 2, 2009:

2:39 PM Changeset [3428] by Fredrik Levander
Merging trunk
2:28 PM Changeset [3427] by Fredrik Levander
Refs #614. Adjustments
1:17 PM Ticket #616 (Spectrum File Inspector should have buttons for previous and next spectrum) closed by olle
fixed: Ticket closed as the requested functionality has been added.
1:09 PM Changeset [3426] by olle
Refs #616. Refs #611. Refs #540. Refs #287. Inspection of mass spectra …
11:55 AM Ticket #616 (Spectrum File Inspector should have buttons for previous and next spectrum) created by olle
Spectrum File Inspector should have buttons for actions to select …

Oct 1, 2009:

3:49 PM Changeset [3425] by olle
Refs #609. Refs #592. Refs #425. Inspection of mass spectra stored in …
3:32 PM Changeset [3424] by Fredrik Levander
Refs #614. Matching of features with hits and more.
11:15 AM Changeset [3423] by Fredrik Levander
Refs #614. Cleaning of feature import plugin
11:08 AM Ticket #615 (Check that project is passed to plug-ins correctly) created by Fredrik Levander
Several plug-ins assume that the project they work on is the one given …
10:23 AM Changeset [3422] by Fredrik Levander
Refs #614. Initial addition of feature table.
10:22 AM Ticket #614 (Feature table) created by Fredrik Levander
Try out if features should be in a table
9:26 AM SiteMap edited by olle
SiteMap updated with new entry BatchImportOfBioMaterialItems under … (diff)
9:17 AM BatchImportOfBioMaterialItems edited by olle
Added section "Examples". (diff)

Sep 30, 2009:

2:55 PM WorkingWithSamples edited by olle
Added section "Batch import". (diff)
2:53 PM BatchImportOfBioMaterialItems created by olle
First revision of BatchImportOfBioMaterialItems wiki page.
9:51 AM Changeset [3421] by olle
Refs #593. Refs #287. First version of batch BioMaterial import. 1. …

Sep 28, 2009:

3:58 PM Changeset [3420] by Fredrik Levander
Creating testing branch of trunk
12:44 PM Changeset [3419] by Gregory Vincic
Refs #569. Refactored out code from doGet(...) method into select(...) …
12:13 PM Changeset [3418] by Gregory Vincic
Refs #569. Refactored out code from doGet(...) into …
11:04 AM Changeset [3417] by Gregory Vincic
Refs #569. Refactored out code into createHeader() method from doGet().
9:38 AM Changeset [3416] by Gregory Vincic
Refs #569. Refactored out code part in GET requests for File items …

Sep 23, 2009:

12:01 PM Ticket #613 (Annotationtype administration interface) created by Fredrik Levander
A common interface for administrating annotation types would be …

Sep 22, 2009:

2:53 PM GelBasedReport edited by Fredrik Levander
(diff)
2:51 PM RenamePLGSfiles.pl attached to GelBasedReport by Fredrik Levander
Perl script for renaming PLGS files
1:58 PM Ticket #612 (Add support for compressed files) created by Fredrik Levander
Proteios SE should handle gzip-compressed files, similarly to BASE. …
10:51 AM Ticket #609 (Spectrum peaks displayed as wide) reopened by Fredrik Levander
The X axis range in a zoomed spectrum is different to the one …
10:16 AM Ticket #611 (Problems with spectrum viewer when many spectra) created by Fredrik Levander
If there are many spectra in a mzData or mzML file, the current …

Sep 21, 2009:

12:46 PM Changeset [3415] by Gregory Vincic
Refs #569. Replaced convertValue(...) method with TypeUtil?.parse(...) …
9:04 AM Changeset [3414] by Gregory Vincic
Refs #569. Refactored curlit method calls into PUT and GET calls. Also …
8:33 AM WikiStart edited by Gregory Vincic
Restyling table layout so that active tickets end up higher on the page (diff)
7:21 AM Ticket #610 (Webservice authentication should support Basic authentication) created by Gregory Vincic
Example http://username:password@proteios.example.com:8080/proteios/app

Sep 15, 2009:

12:56 PM Changeset [3413] by olle
Refs #605. Refs #518. Refs #483. Class/file …

Sep 14, 2009:

4:41 PM Ticket #609 (Spectrum peaks displayed as wide) closed by olle
fixed: Ticket closed as a simple solution to the problem has been …
4:06 PM Changeset [3412] by olle
Refs #609. Refs #592. Inspection of mass spectra stored in spectrum …
2:41 PM Changeset [3411] by Gregory Vincic
Fixes #601. The problem occured when a directory already existed in …
2:41 PM Ticket #601 (Error message missleading when creating new project with duplicate name) closed by Gregory Vincic
fixed: (In [3411]) Fixes #601. The problem occured when a directory already …
9:53 AM Ticket #588 (Start Here wizard forms show the menu) closed by Gregory Vincic
fixed: (In [3410]) Fixes #588. Last step of wizard now also hides the menu.
9:53 AM Changeset [3410] by Gregory Vincic
Fixes #588. Last step of wizard now also hides the menu.
9:40 AM Changeset [3409] by Gregory Vincic
Refs #588. script.js method addField(...) searched the entire document …
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