Timeline



Dec 14, 2009:

4:06 PM Releases edited by olle
Section on Protetios 2.10 release, FTP server, updated in wiki formatting. (diff)
4:03 PM Releases edited by olle
Section on Protetios 2.10 release updated in wiki formatting. (diff)
2:57 PM Ticket #638 (Reformatting of Protein Assembly report) created by Fredrik Levander
The protein assembly report (#484, #495) for isobaric label …
2:55 PM Ticket #637 (Export of TraML inclusion lists) created by Fredrik Levander
It should be possible to export inclusion lists in TraML format
2:53 PM Ticket #636 (Simplify procedure of adding new attribute to existing items) created by Gregory Vincic
While discussing annotations this has come up. Even if we decide to …
12:38 PM MoreAboutProteios edited by Fredrik Levander
(diff)
10:33 AM Changeset [3521] by Gregory Vincic
Bumping MINOR version to 11.
9:58 AM Releases edited by Fredrik Levander
(diff)
9:41 AM Milestone Proteios SE 2.10 completed
See Releases for summary of changes.
9:37 AM ReleaseProcedure edited by Gregory Vincic
Changed tomcat startup script (diff)
9:27 AM ReleaseProcedure edited by Gregory Vincic
(diff)
9:13 AM ReleaseProcedure edited by Gregory Vincic
(diff)
9:08 AM ReleaseProcedure edited by Gregory Vincic
Added svn tagging oneliner (diff)
8:53 AM Changeset [3520] by Gregory Vincic
Tagging 2.10.0 release
8:48 AM Ticket #569 (Web service should allow querying across tables) closed by Gregory Vincic
fixed: The feature works. All variations are not covered though those may be …
8:42 AM Changeset [3519] by Gregory Vincic
Removing VERSION_MARKER

Dec 9, 2009:

3:41 PM Ticket #617 (Warning message when installing or upgrading) closed by olle
fixed: Ticket closed as search results for the warning message on the web …
3:33 PM Installation edited by olle
Section "Quick Install" updated with new sub-section "Note on Warning … (diff)
2:01 PM Changeset [3518] by olle
Refs #619. Refs #327. Class/file coreftpd/ftp_server/MyLS.java in …
12:30 PM Changeset [3517] by olle
Refs #620. Refs #327. Classes related to emptying trash can updated to …
12:17 PM Changeset [3516] by olle
Refs #164. Refs #327. Class/file action/ConfigureTableFactory2.java in …
12:05 PM Changeset [3515] by olle
Refs #594. Refs #327. Class/file core/HibernateUtil.java in api/core/ …
8:54 AM KnownIssuesProteios edited by olle
Wiki formatting updated. (diff)

Dec 8, 2009:

4:16 PM Ticket #614 (Feature table) closed by Fredrik Levander
fixed: It seems feasible to use a feature table, and initial implementations …
7:57 AM Ticket #582 (Table setting in the Hits table should be persistent) closed by olle
fixed: Ticket closed as a first version of user table preferences for tables …
7:49 AM Ticket #164 (Sorting of columns) closed by olle
fixed: Ticket closed as the requested functionality has been added.
7:47 AM Ticket #619 (Allow access to shared project files in ftp) closed by olle
fixed: Ticket closed as the requested functionality has been added.
7:45 AM Ticket #618 (Spectrum viewers should show mass values as tool-tips) closed by olle
fixed: Ticket closed as the requested functionality has been added.
7:38 AM Ticket #612 (Add support for compressed files) closed by olle
fixed: Ticket closed as the requested functionality has been added.

Dec 7, 2009:

4:05 PM Changeset [3514] by Gregory Vincic
Refs #569. It's now possible to do crosstable queries using the …

Dec 4, 2009:

1:14 PM Changeset [3513] by olle
Refs #150. Refs #635. Class/file …
8:08 AM Ticket #635 (It should be possible to start spectrum searches from the menu) closed by olle
fixed: Ticket closed as the the requested functionality has been added.
8:05 AM Changeset [3512] by olle
Refs #287. Refs #635. English dictionary file locale/en/dictionary in …
7:45 AM Changeset [3511] by olle
Refs #635. First version of support for staring spectrum searches from …

Dec 3, 2009:

2:33 PM Ticket #635 (It should be possible to start spectrum searches from the menu) created by olle
Currently spectrum searches are started by first selecting spectrum …

Dec 2, 2009:

4:01 PM Ticket #634 (Update parsing of CATH web page for protein 3D structure data) closed by olle
fixed: Ticket closed as the desired functionality has been added.
2:51 PM Changeset [3510] by olle
Refs #634. Class/file action/hit/ViewActiveHitPDBFile.java in …
2:26 PM Ticket #634 (Update parsing of CATH web page for protein 3D structure data) created by olle
Some of the web links obtained from parsing web pages for protein 3D …

Dec 1, 2009:

4:12 PM Changeset [3509] by Fredrik Levander
Refs #163. Added possibility to combine hits for all samples in a …
12:08 PM Changeset [3508] by olle
Refs #582. First revision of user table preferences for tables managed …
10:15 AM Changeset [3507] by Fredrik Levander
Avoiding potential null pointer exception

Nov 30, 2009:

12:53 PM Changeset [3506] by Gregory Vincic
Refs #569. Added inline comments to method doGet(...)
12:45 PM Changeset [3505] by Gregory Vincic
Refs #569. Initial revision of Cross table query test.
9:15 AM Changeset [3504] by Gregory Vincic
Each test works in it's own directory for better response debugging.

Nov 27, 2009:

1:12 PM Changeset [3503] by olle
Refs #582. Class/file action/ConfigureTableFactory2.java in …
12:51 PM Changeset [3502] by olle
Refs #582. Class/file action/ConfigureTableFactory2.java in …
12:08 PM Changeset [3501] by olle
Refs #582. Class/file action/ConfigureTableFactory2.java in …
11:37 AM Changeset [3500] by olle
Refs #582. Class/file action/ConfigureTableFactory2.java in …

Nov 26, 2009:

2:16 PM Changeset [3499] by olle
Refs #582. Refs #287. Basic support for storing table preferences …
1:24 PM Changeset [3498] by olle
Refs #582. Refs #287. Update in changeset …
1:15 PM Changeset [3497] by olle
Refs #582. Refs #287. Basic support for storing table preferences …
11:07 AM Changeset [3496] by olle
Refs #582. Class gui/table/SortOrder.java in client/servlet/ moved to …

Nov 25, 2009:

9:27 AM Ticket #633 (Unzipping of zip-files) created by Jari Häkkinen
If a user wants to upload a lot of files she has to use ftp. Another …
9:24 AM Ticket #632 (Login fails when ip-number is changed) created by Jari Häkkinen
During a session I switched from wireless to wired connection to the …

Nov 24, 2009:

12:14 PM Changeset [3495] by olle
Refs #164. Class/file action/ConfigureTableFactory2.java in …
11:51 AM Changeset [3494] by olle
Refs #164. Refs #287. First version of support for user-defined column …

Nov 23, 2009:

1:25 PM Changeset [3493] by Gregory Vincic
Fixed verbose output from run.sh

Nov 20, 2009:

8:16 AM Ticket #377 (User-defined order of column sorting) closed by Fredrik Levander
fixed: All tests indicate that it works!
8:15 AM Ticket #597 (Directory and files inaccesible) closed by Fredrik Levander
wontfix: Maybe this functionality is actually the desired after all!
8:11 AM Ticket #620 (Empty trashcan as job) closed by Fredrik Levander
fixed
8:09 AM Ticket #622 (filtering of file colums) closed by Fredrik Levander
fixed: All testing so far indicate that this works
8:08 AM Ticket #621 (Allow files to be annotated) closed by Fredrik Levander
fixed: Files can now be annotated, and there is basic GUI support for it.
8:07 AM Ticket #585 (Deletion of entire project) closed by Fredrik Levander
fixed: The project is not deleted, but the content is. There are still some …

Nov 19, 2009:

3:08 PM Changeset [3492] by Fredrik Levander
Fixes #631. Added utility class for calculation of Mw and pI (from …
3:08 PM Ticket #631 (Retrieve pI and Mw) closed by Fredrik Levander
fixed: (In [3492]) Fixes #631. Added utility class for calculation of Mw and …
2:54 PM Ticket #631 (Retrieve pI and Mw) created by Fredrik Levander
Entries in the hits table currently only get pI and Mw info if it was …

Nov 16, 2009:

10:19 PM Changeset [3491] by Jari Häkkinen
Proteios trac moved.
4:06 PM Changeset [3490] by olle
Refs #377. Refs #287. First version of support for user-defined order …
12:39 PM Changeset [3489] by Gregory Vincic
Renaming running script and refactoring name of argument variables.
12:38 PM Webservice edited by Gregory Vincic
(diff)
12:24 PM Changeset [3488] by Gregory Vincic
Using shorter delay between tests when testing all.
12:17 PM Webservice edited by Gregory Vincic
Note on how to test the webservice (diff)
11:01 AM Changeset [3487] by Gregory Vincic
Removed the need to update test_webservice.sh each time you add a new …
10:56 AM Changeset [3486] by Gregory Vincic
Factoring out each webservice test into a separate file.
9:35 AM Changeset [3485] by Gregory Vincic
Moving webservice tests into the src directory where it belongs.
9:32 AM Changeset [3484] by Gregory Vincic
Refs #630. Test no. 7 now checks that the content of the remote file …
9:29 AM Ticket #630 (Basic authentication in URL does not work for external files) created by Gregory Vincic
Test no. 7 in test_webservice.sh fails. This affects revision r3255
8:56 AM Ticket #623 (Multiple selections results in one job) closed by Gregory Vincic
fixed
Note: See TracTimeline for information about the timeline view.