Timeline



Sep 2, 2010:

5:23 PM Changeset [3815] by Fredrik Levander
Refs #701. Added contact info and sample name addition possibilities
5:20 PM Ticket #701 (Add more info to PRIDE export) created by Fredrik Levander
Sample name and contact info should optionally be added to the mzData …
4:59 PM Changeset [3814] by Gregory Vincic
Bumping revision to 2.14.0-dev
4:57 PM Changeset [3813] by Gregory Vincic
Refs #698. Removed getCombineHitsForm from FormFactory?. Adding several …
9:30 AM Changeset [3812] by Gregory Vincic
Refs #698. Removed methods getHitForm and getGenrateHitsForm from …
9:21 AM Changeset [3811] by Gregory Vincic
Refs #698. Removed method getProjectPluginForm from FormFactory …

Sep 1, 2010:

2:38 PM Changeset [3810] by Gregory Vincic
Refs #698. Removed methods getRolePermissionsTable and …
2:10 PM Changeset [3809] by Gregory Vincic
Refs #698. Removed getRolesForm from FormFactory. Also introduced …
12:05 PM Changeset [3808] by Gregory Vincic
Refs #698. Removed getJobForm method from FormFactory. Also …
11:41 AM Changeset [3807] by Gregory Vincic
Refs #698. Removed method getSelectPluginForm from FormFactory. …
9:26 AM Changeset [3806] by Gregory Vincic
Refs #698. Renaming ImportPluginSelect? to PluginSelect?.
9:17 AM Changeset [3805] by Gregory Vincic
Refs #698. Removed methods getImportFileForm and selectImportPlugins …
8:05 AM Changeset [3804] by Gregory Vincic
Refs #698. Removed selectMimeType method from FormFactory. Also …

Aug 31, 2010:

5:07 PM LibraryExport created by Fredrik Levander
4:48 PM UserGuide edited by Fredrik Levander
(diff)
12:56 PM Ticket #700 (New X!tandem form) created by Fredrik Levander
X!tandem has a lot of advanced parameters that are usually left …
11:25 AM Changeset [3803] by Gregory Vincic
Refs #698. Removed getFileTypeForm from FormFactory.
9:34 AM Changeset [3802] by Gregory Vincic
Refs #698. Removed getNewFileForm, getFileForm and selectFileType …
8:34 AM Changeset [3801] by Gregory Vincic
Refs #698. Removed getViewUserPasswordForm method from FormFactory?.
8:01 AM Changeset [3800] by Gregory Vincic
Refs #698. Removed getViewUserRolesForm() method from FormFactory? and …

Aug 30, 2010:

2:18 PM Changeset [3799] by Gregory Vincic
Refs #698. Removed getGroupsForm() method from FormFactory?. Also …
1:09 PM Changeset [3798] by Gregory Vincic
Refs #698. Fixing bug where description field of user was not saved …
12:52 PM Changeset [3797] by Gregory Vincic
Refs #698. Removing getNewUserForm() method from FormFactory?. …

Aug 27, 2010:

10:24 AM Manual edited by Jari Häkkinen
Fixed broken link. (diff)

Aug 25, 2010:

9:55 PM Changeset [3796] by Jari Häkkinen
Fixing svndigest property
12:44 PM Changeset [3795] by Gregory Vincic
Refs #698. Removed all deprecated methods in FormFactory
12:40 PM Changeset [3794] by Gregory Vincic
Refs #698. Adding ProfilePasswordForm and removing …
9:49 AM Changeset [3793] by Gregory Vincic
Refs #698. Refactored LoginForm? making fields final, also removed …
9:15 AM Ticket #699 (Required fields should be emphasized with blue color) closed by Gregory Vincic
fixed: (In [3792]) Fixes #699. Added check for requirement into …
9:15 AM Changeset [3792] by Gregory Vincic
Fixes #699. Added check for requirement into convert(TextField? ..) method.
9:07 AM Ticket #699 (Required fields should be emphasized with blue color) created by Gregory Vincic
When fixing #696, the blue color disappeared.
8:57 AM Changeset [3791] by Gregory Vincic
Refs #698. Removed newExternalId(), getSampleForm() in FormFactory?. …

Aug 24, 2010:

9:59 AM Changeset [3790] by Gregory Vincic
Refs #698. In FormFactory? Removed method newNameField() Replaced …
9:35 AM Changeset [3789] by Gregory Vincic
Refs #698. Adding UploadField? PluginDefinitionForm? and ClassNameField?
9:27 AM Releases edited by Fredrik Levander
release info updated (diff)

Aug 23, 2010:

2:23 PM Changeset [3788] by Gregory Vincic
Refs #698. Initial revision of ProjectTypeID ProjectStatus? and …
1:59 PM Changeset [3787] by Gregory Vincic
Refs #689. Fixing ViewHit? compile errors.
1:56 PM Changeset [3786] by Gregory Vincic
Refs #689. Initial revision of DBID and ActiveHitID classes
1:38 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:32 PM Milestone Proteios 2.13.0 completed
Focus on - Removing unused code
1:31 PM Changeset [3785] by Fredrik Levander
Form updated with default values
12:44 PM Changeset [3784] by Gregory Vincic
Tagging release 2.13.0
12:42 PM ReleaseProcedure edited by Gregory Vincic
(diff)
11:58 AM ReleaseProcedure edited by Gregory Vincic
(diff)
11:56 AM Changeset [3783] by Gregory Vincic
Updating schema doc
9:54 AM Ticket #698 (Move forms out of the FormFactory) created by Gregory Vincic
Today forms are more or less all created within the FormFactory. This …
9:46 AM Changeset [3782] by Fredrik Levander
Refs #614. reformatted
8:08 AM Changeset [3781] by Gregory Vincic
Refactored and commented on ViewFeatureHits?
7:45 AM Changeset [3780] by Gregory Vincic
Waiting a few seconds before trying to start the ftp service during a …

Aug 18, 2010:

3:35 PM Changeset [3779] by Fredrik Levander
Polishing of form and job return message.
3:18 PM Changeset [3778] by Fredrik Levander
Only querying for peptides
2:43 PM Changeset [3777] by Fredrik Levander
Refs #614. Adding link to feature peptide sequences, to find the …
2:26 PM Changeset [3776] by Gregory Vincic
Fixing problem with going to correct action when session has expired …
2:12 PM Ticket #697 (External ID link from hits report failing) closed by Gregory Vincic
fixed: (In [3775]) Fixes #697. This bug was related to a faulty handling of …
2:12 PM Changeset [3775] by Gregory Vincic
Fixes #697. This bug was related to a faulty handling of responses …
12:58 PM Changeset [3774] by Fredrik Levander
Refs #672. Corrected form.
10:56 AM Ticket #685 (Multiple file selection does not work) closed by Gregory Vincic
fixed: Fixes #685. Multiple file selection now works. This commit also …
10:51 AM Changeset [3773] by Gregory Vincic
Fixing problem with ViewHitSubHits? action. The problem was in the …

Aug 17, 2010:

5:09 PM Changeset [3772] by Fredrik Levander
Fix for decimal sign if not on English system
12:59 PM LabelFree edited by Fredrik Levander
(diff)
12:49 PM LabelFree created by Fredrik Levander
initial
12:39 PM UserGuide edited by Fredrik Levander
(diff)
12:32 PM Changeset [3771] by Fredrik Levander
Refs #639. Also writing precursor quantity to report.
12:31 PM Changeset [3770] by Fredrik Levander
Refs #614. Logging more parameters, and updating of hits when deleting …
12:04 PM Changeset [3769] by Gregory Vincic
Null values in TextField?'s are converted to empty string values, this …
11:26 AM Changeset [3768] by Gregory Vincic
Fixing #685. Multiple file selection now works. This commit also …
8:47 AM Ticket #688 (Support Mascot 2.3 server) closed by Fredrik Levander
fixed: Seems to be functional now
8:46 AM Ticket #697 (External ID link from hits report failing) created by Fredrik Levander
When clicking External ID in the hits report there is a stacktrace. …

Aug 16, 2010:

3:00 PM Changeset [3767] by Gregory Vincic
Refs #685. Refactoring action class ViewActiveMascotParameterSetStorage?
2:14 PM Changeset [3766] by Fredrik Levander
Refs #614. Added log file for matching features to hits.

Aug 13, 2010:

4:35 PM Changeset [3765] by Fredrik Levander
Refs #614. Updated default parameters for matching.
4:34 PM Changeset [3764] by Fredrik Levander
Refs #614. Updates in feature hit matching. Allowing matching with …
10:57 AM Ticket #696 (Long labels within forms are wrapped along with help messages) closed by Gregory Vincic
fixed

Aug 11, 2010:

12:50 PM uploadFileToProSE.sh attached to WebservicePutExamples by Gregory Vincic
Example shell script for uploading files to ProSE

Aug 10, 2010:

11:04 AM Changeset [3763] by Fredrik Levander
Refs #688. Removed results script name from mascot parameters, since …

Aug 9, 2010:

2:25 PM Ticket #695 (Hits comparison count is incorrect) closed by Fredrik Levander
fixed
12:18 PM Changeset [3762] by Gregory Vincic
Refs #696. Emphasized help text with italic font.
10:25 AM Ticket #672 (Protein level FDR) closed by Fredrik Levander
fixed: (In [3761]) Fixes #672. Updated help text
10:25 AM Changeset [3761] by Fredrik Levander
Fixes #672. Updated help text
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