Timeline



Sep 27, 2010:

9:10 AM Ticket #707 (Renaming of search parameter sets) created by Fredrik Levander
It should be possible to rename search parameter sets. Also, the …

Sep 24, 2010:

7:51 AM Changeset [3869] by Gregory Vincic
Refs #698. Removed method getNewXtandemParameterSetStorageForm from …

Sep 23, 2010:

9:37 AM Changeset [3868] by Gregory Vincic
Changed ProteiosAction? to debug all parameters and attributes when …
8:44 AM Changeset [3867] by Gregory Vincic
Refs #698. Removed method getOMSSAParameterSetStorageForm from …
8:36 AM Changeset [3866] by Gregory Vincic
Refs #698. Removed method getSaveAsOMSSAParameterSetStorageForm from …
8:31 AM Changeset [3865] by Gregory Vincic
Refs #698. Removed method getNewOMSSAParameterSetStorageForm from …

Sep 22, 2010:

2:49 PM Webservice edited by Gregory Vincic
How to download a file through webservice (diff)

Sep 20, 2010:

11:31 AM Changeset [3864] by Gregory Vincic
Refs #698. Removed method getFileProtocolForm from FormFactory. …
11:05 AM Changeset [3863] by Gregory Vincic
Refs #698. Removed method getMascotParameterSetForm from FormFactory.
9:03 AM Changeset [3862] by Gregory Vincic
Refs #698. Removed method getMascotSearchUserDataInputForm from …
8:50 AM Changeset [3861] by Gregory Vincic
Refs #698. Removed method getSaveAsMascotParameterSetStorageFrom from …

Sep 17, 2010:

4:20 PM Ticket #706 (Delete results for one local sample id from hits table) created by Fredrik Levander
If doing mistakes when importing data into the hits table, currently …

Sep 16, 2010:

3:28 PM Changeset [3860] by Fredrik Levander
Refs #705. Retrieving raw query match results when retrieving mascot …
1:36 PM Changeset [3859] by Gregory Vincic
Refs #698. Removed method getNewMascotParameterSetStorageForm from …
12:52 PM Changeset [3858] by Gregory Vincic
Refs #698. Removed method addOMSSAParameterSetToFieldset from FormFactory
11:37 AM Changeset [3857] by Gregory Vincic
Refs #698. Removed method addVStringParameterToFieldset from FormFactory
11:18 AM Changeset [3856] by Gregory Vincic
Refs #698. Removed method getStringSelectBox from FormFactory
10:01 AM Changeset [3855] by Gregory Vincic
Refs #698. Removed methods getIPGForm, getSeparationMethodForm and …
9:33 AM Changeset [3854] by Gregory Vincic
Refs #698. Removed method getPrideExportForm from FormFactory

Sep 15, 2010:

3:06 PM Changeset [3853] by Gregory Vincic
Refs #698. Removing newStringSelectBox2 method from FormFactory
1:39 PM Changeset [3852] by Gregory Vincic
Refs #698. Removing remaining debug log messages from FormFactory.
1:30 PM Ticket #705 (Add modification location and delta score to Mascot import) created by Fredrik Levander
The modified site and the difference in score compared to that of the …
9:12 AM Changeset [3851] by Gregory Vincic
Refs #698. Removing all createField(...) methods from FormFactory …

Sep 14, 2010:

2:55 PM Changeset [3850] by Gregory Vincic
Refs #698. Introducing method setMaxSize in Select class and replacing …
2:40 PM Changeset [3849] by Gregory Vincic
Refs #698. Removed method getHitsComparisonReportProjectSelectionForm …
12:22 PM Changeset [3848] by Fredrik Levander
Refs #701. Refs #405. Only exporting PRIDE files for the selected …
11:40 AM Changeset [3847] by Fredrik Levander
Refs #701. Refs #405. Not writing gel element anymore, since PRIDE …
8:51 AM Changeset [3846] by Gregory Vincic
Refs #698. Removed method getImportHitsNonGelWizardStep2Form from …
8:06 AM Changeset [3845] by Gregory Vincic
Refs #698. Removed method VLOCALSAMPLEID from FormFactory

Sep 13, 2010:

9:43 AM Ticket #704 (Deleting a project does not place the project in Trash) created by Jari Häkkinen
... or is it in the trash? The GUI does not show the deleted project …
9:00 AM Changeset [3844] by Gregory Vincic
Refs #698. Removed method VLOCALSAMPLEIDSELECT from FormFactory

Sep 10, 2010:

2:33 PM Changeset [3843] by Gregory Vincic
Refs #698. Removed method selectLocalSampleId method from FormFactory
2:09 PM Changeset [3842] by Gregory Vincic
Refs #698. Replaced Fieldset.getLegendTitle with getTitle.
1:24 PM Changeset [3841] by Gregory Vincic
Refs #698. Removed getImportHitsWizardStep3Form method from FormFactory

Sep 9, 2010:

3:16 PM Changeset [3840] by Gregory Vincic
Refs #698. Removed getImportHitsWizardStep2Form method from FormFactory
1:22 PM Changeset [3839] by Gregory Vincic
Refs #698. Removed getImportHitsWizardStep1Form method from FormFactory

Sep 8, 2010:

1:43 PM Changeset [3838] by Gregory Vincic
Refs #698. Using OrganisationField and NextButtonNameField
1:25 PM Changeset [3837] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VORGANISATION with …
12:11 PM Changeset [3836] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VADDRESS with …
11:28 AM Changeset [3835] by Fredrik Levander
Fixes #703. Retrieving prot_empai and parsing it in hits import.
11:28 AM Ticket #703 (Retrieve empai from Mascot results) closed by Fredrik Levander
fixed: (In [3835]) Fixes #703. Retrieving prot_empai and parsing it in hits …
11:22 AM Changeset [3834] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VPHONE with …
11:10 AM Ticket #703 (Retrieve empai from Mascot results) created by Fredrik Levander
The empai in the Mascot results can be used for spectral counting …
11:10 AM Changeset [3833] by Gregory Vincic
Refs #698. Removed Method class from core and truncated imports in …
11:02 AM Changeset [3832] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VEMAIL with …
10:49 AM Changeset [3831] by Gregory Vincic
Refs #698. Removed VLOGIN from FormFactory
10:45 AM Changeset [3830] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VUSERNAME with …
10:09 AM Changeset [3829] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VSTORAGELOCATION with …
9:43 AM Changeset [3828] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VDESCR with …
9:37 AM Changeset [3827] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VNAME with NameField.VPARAM
9:25 AM Changeset [3826] by Gregory Vincic
Refs #698. Replaced references to FormFactory.VFDR with !FDRField.VPARAM
9:19 AM Changeset [3825] by Gregory Vincic
Refs #698. Replaced references FormFactory.VFWDACTION with …
9:11 AM Changeset [3824] by Gregory Vincic
Refs #698. Removed VCONCENTRATION from FormFactory

Sep 7, 2010:

2:18 PM Changeset [3823] by Gregory Vincic
Refs #698. Removed VFILESELECTIONTITLE from FormFactory.
11:36 AM Changeset [3822] by Fredrik Levander
Refs #698. Now creating new String for each scoretype.
8:56 AM Changeset [3821] by Gregory Vincic
Refs #698. Removed VPLUGINDEFID from FormFactory?.

Sep 6, 2010:

3:06 PM Ticket #702 (Logged-in users are not always visible) created by Fredrik Levander
For some reason root cannot always see when users are logged in which …
2:57 PM Changeset [3820] by Fredrik Levander
Refs #701. Updated string matching to so that <contact not matches …
2:27 PM Changeset [3819] by Fredrik Levander
Refs #701. Writing gel id if no local sample id.
11:51 AM Changeset [3818] by Gregory Vincic
Refs #698. Removed VEXTERNALID from FormFactory, using …
11:19 AM Changeset [3817] by Gregory Vincic
Refs #698. Removing sequential hits import actions as they are not …
10:57 AM Changeset [3816] by Gregory Vincic
Refs #698. Removed method getGelExternalIdField from FormFactory.

Sep 2, 2010:

5:23 PM Changeset [3815] by Fredrik Levander
Refs #701. Added contact info and sample name addition possibilities
5:20 PM Ticket #701 (Add more info to PRIDE export) created by Fredrik Levander
Sample name and contact info should optionally be added to the mzData …
4:59 PM Changeset [3814] by Gregory Vincic
Bumping revision to 2.14.0-dev
4:57 PM Changeset [3813] by Gregory Vincic
Refs #698. Removed getCombineHitsForm from FormFactory?. Adding several …
9:30 AM Changeset [3812] by Gregory Vincic
Refs #698. Removed methods getHitForm and getGenrateHitsForm from …
9:21 AM Changeset [3811] by Gregory Vincic
Refs #698. Removed method getProjectPluginForm from FormFactory …

Sep 1, 2010:

2:38 PM Changeset [3810] by Gregory Vincic
Refs #698. Removed methods getRolePermissionsTable and …
2:10 PM Changeset [3809] by Gregory Vincic
Refs #698. Removed getRolesForm from FormFactory. Also introduced …
12:05 PM Changeset [3808] by Gregory Vincic
Refs #698. Removed getJobForm method from FormFactory. Also …
11:41 AM Changeset [3807] by Gregory Vincic
Refs #698. Removed method getSelectPluginForm from FormFactory. …
9:26 AM Changeset [3806] by Gregory Vincic
Refs #698. Renaming ImportPluginSelect? to PluginSelect?.
9:17 AM Changeset [3805] by Gregory Vincic
Refs #698. Removed methods getImportFileForm and selectImportPlugins …
8:05 AM Changeset [3804] by Gregory Vincic
Refs #698. Removed selectMimeType method from FormFactory. Also …

Aug 31, 2010:

5:07 PM LibraryExport created by Fredrik Levander
4:48 PM UserGuide edited by Fredrik Levander
(diff)
12:56 PM Ticket #700 (New X!tandem form) created by Fredrik Levander
X!tandem has a lot of advanced parameters that are usually left …
11:25 AM Changeset [3803] by Gregory Vincic
Refs #698. Removed getFileTypeForm from FormFactory.
9:34 AM Changeset [3802] by Gregory Vincic
Refs #698. Removed getNewFileForm, getFileForm and selectFileType …
8:34 AM Changeset [3801] by Gregory Vincic
Refs #698. Removed getViewUserPasswordForm method from FormFactory?.
8:01 AM Changeset [3800] by Gregory Vincic
Refs #698. Removed getViewUserRolesForm() method from FormFactory? and …

Aug 30, 2010:

2:18 PM Changeset [3799] by Gregory Vincic
Refs #698. Removed getGroupsForm() method from FormFactory?. Also …
1:09 PM Changeset [3798] by Gregory Vincic
Refs #698. Fixing bug where description field of user was not saved …
12:52 PM Changeset [3797] by Gregory Vincic
Refs #698. Removing getNewUserForm() method from FormFactory?. …
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