Timeline



Dec 6, 2010:

3:45 PM Changeset [4057] by olle
Refs #327. Classes/files plugins/HitsComparisonReportPlugin.java and …
3:42 PM Changeset [4056] by olle
Refs #327. Classes/files gui/form/Fieldset.java, …
2:59 PM Changeset [4055] by olle
Refs #327. Ant build file build.xml in api/core/ updated by updating …
2:57 PM Changeset [4054] by olle
Refs #327. Classes/files core/PropertyFilter.java, …
2:34 PM Ticket #729 (Dangling tags in Home view and others) created by Gregory Vincic
This error is generated when there are dom objects created but not …
2:29 PM Ticket #728 (Localization for non localizable value in File -> Select project ...) created by Gregory Vincic
Last entry in File -> Select project menu which displays number of …
1:36 PM Changeset [4053] by olle
Refs #287. English dictionary file locale/en/dictionary in …
12:44 PM Changeset [4052] by olle
Refs #327. Class/file action/directory/ViewActiveDirectory.java in …
11:58 AM Ticket #706 (Delete results for one local sample id from hits table) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:34 AM Changeset [4051] by Gregory Vincic
Removing unchecked warning when retrieving list values from the …

Dec 3, 2010:

3:28 PM Changeset [4050] by olle
Refs #706. Refs #287. Refs #290. Hits table "Clear Hits" button …
3:07 PM Changeset [4049] by olle
Refs #706. Refs #717. Class/file action/hit/ListHits.java in …
2:32 PM Changeset [4048] by olle
Refs #706. Refs #698. Class/file gui/form/ExternalGelIdSelect.java …

Dec 1, 2010:

4:41 PM Ticket #726 (shared files not visible via ftp) closed by olle
fixed: Ticket closed, as the Proteios SE FTP Server has been updated to …
4:01 PM Changeset [4047] by olle
Refs #726. Refs #619. Proteios SE FTP Server updated to improve the …
11:04 AM Changeset [4046] by olle
Refs #726. Refs #619. Class/file coreftpd/ftp_server/MyLS.java in …

Nov 26, 2010:

1:59 PM Changeset [4045] by Gregory Vincic
Updated init.sh script to use SERVICE_PATH setting in WEB-INF/config …
10:31 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:30 AM Changeset [4044] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:41 AM Changeset [4043] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:40 AM Changeset [4042] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:16 AM Extensions/SpectrumFileInspector edited by olle
Documentation updated with note that active development of external … (diff)
8:40 AM Changeset [4041] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
8:33 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) created by olle
With increasing importance of spectrum files relative to peak lists …

Nov 25, 2010:

2:58 PM Ticket #720 (Add context for ViewFile) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:49 PM Changeset [4040] by olle
Refs #720. Refs #554. Refs #287. Refs #290. First version of file type …
1:59 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:58 PM ReleaseProcedure edited by Gregory Vincic
Adding links to mailinglist, twitter and facebook (diff)
1:55 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:54 PM ReleaseProcedure edited by Gregory Vincic
Linked NewLinuxInstall2 (diff)
1:52 PM ReleaseProcedure edited by Gregory Vincic
Linked TestWebservice page (diff)
1:52 PM TestWebservice created by Gregory Vincic
1:43 PM ReleaseProcedure edited by Gregory Vincic
Reusing BuildReleasePackages information in second section of the procedure (diff)
1:40 PM GenerateHomepage edited by Gregory Vincic
(diff)
1:40 PM GenerateHomepage edited by Gregory Vincic
(diff)
1:39 PM TagRelease edited by Gregory Vincic
(diff)
1:39 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:39 PM BuildReleasePackages created by Gregory Vincic
Adding notes on how to build release packages along with rpms
12:01 PM Changeset [4039] by Fredrik Levander
Deleted some queries from which the results were not used.

Nov 24, 2010:

3:39 PM Ticket #717 (Move some of the hit table buttons to an Extensions button) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
3:36 PM Ticket #698 (Move forms out of the FormFactory) closed by olle
fixed: Ticket closed as class FormFactory has been refactored to only …
3:26 PM Changeset [4038] by olle
Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
3:20 PM Changeset [4037] by olle
Refs #698. Classes/files in client/servlet/ updated in connection with …
1:35 PM Changeset [4036] by olle
Refs #698. Classes/files updated in connection with exchanging use of …
1:01 PM Changeset [4035] by olle
Refs #698. Classes/files updated in connection with exchanging use of …
12:46 PM Changeset [4034] by olle
Refs #698. Classes/files updated in connection with exchanging use of …
12:09 PM Changeset [4033] by olle
Refs #698. Classes/files action/SetSortColumn.java, …
11:58 AM Changeset [4032] by olle
Refs #698. Classes/files gui/form/FormFactory.java and …
11:41 AM Changeset [4031] by olle
Refs #698. Class/file action/file/InspectActiveSpectrumFile.java in …
11:21 AM Changeset [4030] by olle
Refs #698. Classes/files updated in connection with move of valid …
9:44 AM Changeset [4029] by Gregory Vincic
Removing unused class
9:39 AM Changeset [4028] by Gregory Vincic
Removing unused class MenuFactory?
9:35 AM Changeset [4027] by olle
Refs #698. Classes/files updated in connection with move of valid …
8:58 AM Changeset [4026] by olle
Refs #698. Classes/files gui/form/FormFactory.java and …
8:46 AM Changeset [4025] by olle
Refs #698. Classes/files gui/form/FormFactory.java, …

Nov 23, 2010:

4:03 PM Changeset [4024] by olle
Refs #698. Classes/files updated in connection with move of valid …
2:33 PM Changeset [4023] by olle
Refs #698. Classes/files gui/form/FormFactory.java and …
2:10 PM Changeset [4022] by olle
Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
1:53 PM Ticket #726 (shared files not visible via ftp) created by Fredrik Levander
User A creates a Project and gives user B full access rights. In the …
1:22 PM Changeset [4021] by olle
Refs #698. Classes/files gui/form/FormFactory.java, …
12:50 PM Changeset [4020] by olle
Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
12:08 PM Changeset [4019] by olle
Refs #698. Valid parameter VInteger VDIRID removed from class/file …
9:53 AM ReleaseProcedure edited by Gregory Vincic
Removed steps for upgrading demo server as it's not functioning anymore (diff)
9:52 AM Changeset [4018] by olle
Refs #698. Valid parameter VInteger VGROUPID moved from class/file …
9:52 AM ReleaseProcedure edited by Gregory Vincic
Adding instructions on how to generate homepage during release (diff)
9:51 AM GenerateHomepage created by Gregory Vincic
8:37 AM Ticket #716 (Remove description in Extension popups) closed by Gregory Vincic
fixed
8:32 AM Changeset [4017] by Gregory Vincic
Refs #698. Sorted valid parameters. This refactoring is considered …

Nov 22, 2010:

3:35 PM Changeset [4016] by olle
Refs #717. Refs #287. Refs #290. First version of extensions button …
2:38 PM Changeset [4015] by Gregory Vincic
Refs #698. Removed VROLEPERMISSIONID, VWELLPOSITION, VCONFIRM, …
2:32 PM Changeset [4014] by Gregory Vincic
Refs #698. Removed VPWD1 and VPWD2 from FormFactory.
2:22 PM Changeset [4013] by Gregory Vincic
Refs #698. Removed VPROTOCOLFILERESET together with a bunch of unused …
2:19 PM Changeset [4012] by Gregory Vincic
Refs #698. Removed VPROTOCOLFILERESET from FormFactory.
2:03 PM Changeset [4011] by Gregory Vincic
Refs #698. Removed method newValueField from FormFactory.
1:57 PM Changeset [4010] by Gregory Vincic
Refs #698. Removed unused method newSelectLabel in FormFactory.
1:48 PM Changeset [4009] by Gregory Vincic
Refs #698. Removed method getSecondaryLabeledExtractForm from FormFactory
1:14 PM Changeset [4008] by Gregory Vincic
Refs #698. Removed methods getUsedSampleFieldset, …
12:38 PM Changeset [4007] by Gregory Vincic
Refs #698. Removed method getProteinAssemblyFieldset from FormFactory.
12:24 PM Changeset [4006] by Gregory Vincic
Refs #698. Removed method getSpectrumFileSampleInputForm from FormFactory.
11:29 AM Changeset [4005] by Gregory Vincic
Refs #698. Moved method getSpectrumPropertiesForm into action …
11:23 AM Changeset [4004] by Gregory Vincic
Refs #698. Removed unused methods get/setForwardActionId from FormFactory.
9:49 AM Changeset [4003] by Gregory Vincic
Refs #698. Removed method getSpectrumMassSelectionForm from FormFactory.
9:29 AM Changeset [4002] by Gregory Vincic
Refs #698. Removed couple of the annotations related constraints in …
9:25 AM Changeset [4001] by Gregory Vincic
Refs #698. Removed method getAnnotationsForm from FormFactory.

Nov 19, 2010:

2:38 PM Ticket #705 (Add modification location and delta score to Mascot import) closed by Fredrik Levander
fixed
2:37 PM Ticket #701 (Add more info to PRIDE export) closed by Fredrik Levander
fixed: The information is now added.
12:54 PM Ticket #715 (Windows install fails) closed by olle
fixed: Ticket closed as a fix for the problem has been added. Should the …
12:49 PM Changeset [4000] by olle
Refs #715. Proteios SE installation script file install-win.bat in …
12:35 PM Changeset [3999] by Fredrik Levander
Fixes #725. Changed random prefix to r. Still keeping support for IPR …
12:35 PM Ticket #725 (Change default decoy prefix) closed by Fredrik Levander
fixed: (In [3999]) Fixes #725. Changed random prefix to r. Still keeping …
12:33 PM Ticket #725 (Change default decoy prefix) created by Fredrik Levander
The IPI databases are no longer supported, and people are expected to …

Nov 18, 2010:

5:07 PM Installation edited by olle
Changed path delimiter for Windows paths from '/' to '\'. (diff)
5:04 PM Installation edited by olle
Description updated by fixing typo. (diff)
2:29 PM Installation edited by Fredrik Levander
(diff)
2:20 PM Ticket #441 (Use In Project button should be shaded if no project is active) closed by olle
worksforme: Ticket closed, as the desired behavior already has been implemented …
2:16 PM Ticket #707 (Renaming of search parameter sets) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:12 PM Installation edited by Fredrik Levander
(diff)
2:11 PM Installation edited by Fredrik Levander
(diff)
2:11 PM Changeset [3998] by olle
Refs #707. Refs #362. Refs #287. First version of support for editing …
1:14 PM Changeset [3997] by olle
Refs #707. Refs #471. First version of support for editing of OMSSA …
12:55 PM Changeset [3996] by olle
Refs #707. Refs #534. Class/file …
12:44 PM Changeset [3995] by Gregory Vincic
Refs #698. Removed couple of unused private methods.
12:37 PM Changeset [3994] by Gregory Vincic
Refs #698. Removed method getHitPeakListForm from FormFactory.
12:24 PM Changeset [3993] by olle
Refs #707. Refs #362. Class/file …
12:19 PM Changeset [3992] by olle
Refs #707. Refs #287. English dictionary file locale/en/dictionary in …
12:18 PM Changeset [3991] by Gregory Vincic
Refs #698. Moved method getHitPeakListForm from FormFactory to action …
12:08 PM Changeset [3990] by Gregory Vincic
Refs #698. Moved method getPeakListForm from FormFactory into action …

Nov 17, 2010:

2:44 PM ReleaseProcedure edited by Gregory Vincic
(diff)
2:44 PM TagRelease created by Gregory Vincic
Adding instructions on how to tag a release
2:38 PM ReleaseProcedure edited by Gregory Vincic
(diff)
2:37 PM UpdateDatabaseSchemaDoc created by Gregory Vincic
Adding instructions on how to generate database schema doc
2:36 PM Changeset [3989] by olle
Refs #707. Refs #287. Refs #290. First version of support for editing …
2:29 PM Changeset [3988] by Gregory Vincic
Changed my developer status in the about text.
2:07 PM Extensions/GettingStarted edited by Gregory Vincic
Linking to trunk versions of the examples (diff)
2:02 PM Extensions/GettingStarted edited by Gregory Vincic
Linking build.xml to trunk version (diff)
2:00 PM Changeset [3987] by Gregory Vincic
Added example code for extensions that is available from the manual.
1:44 PM Changeset [3986] by Gregory Vincic
Refs #698. Moved method addHiddenField from FormFactory into Table …
1:32 PM Changeset [3985] by Gregory Vincic
Refs #698. Removed methods newOriginalQuantityField and …
11:23 AM Changeset [3984] by Gregory Vincic
Refs #698. Moved method addHiddenField(Form...) from FormFactory into …
11:11 AM Changeset [3983] by Gregory Vincic
Refs #698. Removing method selectLocalSampleIdWithAllOption from …
11:03 AM Changeset [3982] by Gregory Vincic
Refs #698. Removing couple of private methods for creating fields in …
10:02 AM Changeset [3981] by Gregory Vincic
Refs #547. Fixed problem with long response times by setting …
9:53 AM Changeset [3980] by Gregory Vincic
Refs #698. Removed method getNewProtocolForm from FormFactory

Nov 16, 2010:

2:50 PM Ticket #710 (Select multiple databases for Mascot search) closed by olle
fixed: Ticket is closed as the desired functionality has been added. Should …

Nov 15, 2010:

11:15 AM Changeset [3979] by Gregory Vincic
Fixing warning from ant when compiling. Added missing …

Nov 11, 2010:

2:48 PM Changeset [3978] by olle
Refs #710. Refs #534. Class/file gui/form/MascotStorageForm.java in …
10:37 AM Changeset [3977] by Fredrik Levander
Added log warning message
8:36 AM Changeset [3976] by Gregory Vincic
Adding tests for many projects

Nov 10, 2010:

4:42 PM Changeset [3975] by Fredrik Levander
Fixes #724. Fixed bug
4:02 PM Changeset [3974] by olle
Refs #710. Refs #534. Class/file …
3:41 PM Changeset [3973] by olle
Refs #710. Refs #534. Mascot search updated to support selection of …
3:25 PM Changeset [3972] by Fredrik Levander
Fixes #724. Added plugin that lists ion injection times to file.
3:25 PM Ticket #724 (Report ion injection times) closed by Fredrik Levander
fixed: (In [3972]) Fixes #724. Added plugin that lists ion injection times to …
3:24 PM Ticket #724 (Report ion injection times) created by Fredrik Levander
A plugin that reports ion injectuion times in an mzML file should be …
11:24 AM Changeset [3971] by olle
Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
11:22 AM Changeset [3970] by olle
Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
10:42 AM Ticket #723 (Button icon should be displayed in gray if the button action is disabled) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:02 AM Changeset [3969] by olle
Refs #723. Refs #290. Refs #441. Icon image repository …
9:53 AM Changeset [3968] by olle
Refs #723. Class/file gui/web/GUIConverter.java in client/servlet/ …
8:44 AM Ticket #723 (Button icon should be displayed in gray if the button action is disabled) created by olle
A button icon should be displayed in gray if the button action is …
8:20 AM Ticket #702 (Logged-in users are not always visible) closed by Gregory Vincic
worksforme: Needs to be verified so it's not just a session timeout.

Nov 8, 2010:

3:02 PM Ticket #719 (Project table scroller on Home page results in NullPointerException) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
3:01 PM Ticket #718 (Menu items below View > Trash should be inactivated if they are empty) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
3:00 PM Ticket #704 (Deleting a project does not place the project in Trash) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:59 PM Ticket #547 (Select Project list too long) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:58 PM Ticket #700 (New X!tandem form) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:51 PM Changeset [3967] by olle
Refs #718. Class/file gui/MainMenu.java in client/servlet/ updated to …
2:29 PM Ticket #722 (Add delete button to hits table for partial deletion of ...) created by Gregory Vincic
2:21 PM Ticket #721 (Webservice create project fails to share project directory to project) created by Gregory Vincic
1:56 PM Ticket #720 (Add context for ViewFile) created by Gregory Vincic
To enable extensions that work on a file for a specific file type.
12:41 PM Changeset [3966] by olle
Refs #719. Class/file action/read/ViewHome.java in client/servleT/ …
11:52 AM Changeset [3965] by Gregory Vincic
Refs #698. Removed method getUserPreferencesConfigurationForm from …
11:25 AM Changeset [3964] by olle
Refs #719. Class/file action/read/ViewHome.java in client/servleT/ …
11:15 AM Ticket #719 (Project table scroller on Home page results in NullPointerException) created by olle
If a user has more projects than can be fitted in the projects table …
10:57 AM Ticket #718 (Menu items below View > Trash should be inactivated if they are empty) created by Gregory Vincic
Also if there is nothing in the trash, the main View -> Trash should …
9:13 AM Ticket #717 (Move some of the hit table buttons to an Extensions button) created by Gregory Vincic
The toolbar is far to long and wraps over two lines. Move some of the …
Note: See TracTimeline for information about the timeline view.