Timeline
Dec 15, 2010:
- 3:51 PM Changeset [4074] by
- Refs #668. Support for running msInspect feature finding from Proteios …
- 3:00 PM Changeset [4073] by
- Refs #668. Refs #287. First version of support for running msInspect …
- 2:28 PM Changeset [4072] by
- Refs #668. New directory action/msInspect/ in client/servlet/ added.
- 2:24 PM Changeset [4071] by
- Refs #668. Support for msInspect properties file added: 1. New …
Dec 14, 2010:
Dec 13, 2010:
- 2:39 PM ImplementPlugin edited by
- Linked the javadoc instead of sourcecode (diff)
- 2:38 PM Extensions/GettingStarted edited by
- Removing link to ImplementExtension? (diff)
- 2:26 PM Extensions/GettingStarted edited by
- (diff)
- 2:25 PM WikiStart edited by
- (diff)
- 2:24 PM Extensions/Manual created by
- Extensions/Manual → …
- 2:24 PM WikiStart edited by
- Added link on frontpage to the ExtensionManual (diff)
- 10:41 AM Ticket #733 (Add a demo project extension for non-gel based projects) created by
- There should be some demo data for testing non-gel based projects
- 8:37 AM Ticket #732 (Starting X!Tandem search crashes when trying to select a parameter set ...) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
Dec 10, 2010:
- 12:52 PM Changeset [4070] by
- Refs #732. Class/file …
- 12:26 PM Changeset [4069] by
- Refs #732. Class/file …
Dec 9, 2010:
- 4:40 PM Changeset [4068] by
- Bumping version number and changed to dev.
- 4:11 PM Changeset [4067] by
- Refs #732. Class/file …
- 3:43 PM Ticket #732 (Starting X!Tandem search crashes when trying to select a parameter set ...) created by
- Starting X!Tandem search crashes when trying to select a parameter set …
- 12:17 PM Changeset [4066] by
- Refs #435. Class/file io/XTandemParameterSetOptionsUtil.java in …
Dec 8, 2010:
- 11:25 AM Milestone Proteios SE 2.14.0 completed
- - Improve forms with more help
- 10:03 AM UpdateDatabaseSchemaDoc edited by
- (diff)
- 9:46 AM GenerateHomepage edited by
- (diff)
- 9:45 AM GenerateHomepage edited by
- (diff)
- 9:15 AM ReleaseProcedure edited by
- (diff)
- 9:09 AM TagRelease edited by
- (diff)
- 9:06 AM Changeset [4065] by
- Tagging release 2.14.0
- 8:31 AM TestWebservice edited by
- (diff)
- 8:19 AM BuildReleasePackages edited by
- (diff)
- 8:18 AM Changeset [4064] by
- Starting release procedure. Setting version to 2.14.0
- 8:16 AM ReleaseProcedure edited by
- Moved schema update step (diff)
Dec 7, 2010:
- 3:51 PM Changeset [4063] by
- Refs #435. Class/file plugins/SearchXTandemPlugin.java in plugin/ …
- 3:17 PM Changeset [4062] by
- Refs #700. Class/file gui/form/XTandemParameterSetForm.java in …
- 11:07 AM Changeset [4061] by
- Cleaning up source code
- 9:55 AM Ticket #731 (Setup automated javadoc generation) created by
- I attached a script on the JavaDoc page that could be used for this.
- 9:22 AM JavaDoc edited by
- Added note on javadoc generation (diff)
- 9:04 AM Changeset [4060] by
- Refs #287. English dictionary file locale/en/dictionary in …
- 8:43 AM Changeset [4059] by
- Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
- 8:35 AM Ticket #730 (HitComparisonReport labels and fieldset titles need rephrasing) created by
- The report is done in two steps, the main title should read "Hits …
- 7:59 AM Ticket #729 (Dangling tags in Home view and others) closed by
- fixed: (In [4058]) Fixes #729. The filter row is now always generated and …
- 7:59 AM Changeset [4058] by
- Fixes #729. The filter row is now always generated and hidden using …
Dec 6, 2010:
- 3:45 PM Changeset [4057] by
- Refs #327. Classes/files plugins/HitsComparisonReportPlugin.java and …
- 3:42 PM Changeset [4056] by
- Refs #327. Classes/files gui/form/Fieldset.java, …
- 2:59 PM Changeset [4055] by
- Refs #327. Ant build file build.xml in api/core/ updated by updating …
- 2:57 PM Changeset [4054] by
- Refs #327. Classes/files core/PropertyFilter.java, …
- 2:34 PM Ticket #729 (Dangling tags in Home view and others) created by
- This error is generated when there are dom objects created but not …
- 2:29 PM Ticket #728 (Localization for non localizable value in File -> Select project ...) created by
- Last entry in File -> Select project menu which displays number of …
- 1:36 PM Changeset [4053] by
- Refs #287. English dictionary file locale/en/dictionary in …
- 12:44 PM Changeset [4052] by
- Refs #327. Class/file action/directory/ViewActiveDirectory.java in …
- 11:58 AM Ticket #706 (Delete results for one local sample id from hits table) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
- 10:34 AM Changeset [4051] by
- Removing unchecked warning when retrieving list values from the …
Dec 3, 2010:
- 3:28 PM Changeset [4050] by
- Refs #706. Refs #287. Refs #290. Hits table "Clear Hits" button …
- 3:07 PM Changeset [4049] by
- Refs #706. Refs #717. Class/file action/hit/ListHits.java in …
- 2:32 PM Changeset [4048] by
- Refs #706. Refs #698. Class/file gui/form/ExternalGelIdSelect.java …
Dec 1, 2010:
- 4:41 PM Ticket #726 (shared files not visible via ftp) closed by
- fixed: Ticket closed, as the Proteios SE FTP Server has been updated to …
- 4:01 PM Changeset [4047] by
- Refs #726. Refs #619. Proteios SE FTP Server updated to improve the …
- 11:04 AM Changeset [4046] by
- Refs #726. Refs #619. Class/file coreftpd/ftp_server/MyLS.java in …
Nov 26, 2010:
- 1:59 PM Changeset [4045] by
- Updated init.sh script to use SERVICE_PATH setting in WEB-INF/config …
- 10:31 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
- 10:30 AM Changeset [4044] by
- Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
- 9:41 AM Changeset [4043] by
- Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
- 9:40 AM Changeset [4042] by
- Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
- 9:16 AM Extensions/SpectrumFileInspector edited by
- Documentation updated with note that active development of external … (diff)
- 8:40 AM Changeset [4041] by
- Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
- 8:33 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) created by
- With increasing importance of spectrum files relative to peak lists …
Nov 25, 2010:
- 2:58 PM Ticket #720 (Add context for ViewFile) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
- 2:49 PM Changeset [4040] by
- Refs #720. Refs #554. Refs #287. Refs #290. First version of file type …
- 1:59 PM ReleaseProcedure edited by
- (diff)
- 1:58 PM ReleaseProcedure edited by
- Adding links to mailinglist, twitter and facebook (diff)
- 1:55 PM ReleaseProcedure edited by
- (diff)
- 1:54 PM ReleaseProcedure edited by
- Linked NewLinuxInstall2 (diff)
- 1:52 PM ReleaseProcedure edited by
- Linked TestWebservice page (diff)
- 1:52 PM TestWebservice created by
- 1:43 PM ReleaseProcedure edited by
- Reusing BuildReleasePackages information in second section of the procedure (diff)
- 1:40 PM GenerateHomepage edited by
- (diff)
- 1:40 PM GenerateHomepage edited by
- (diff)
- 1:39 PM TagRelease edited by
- (diff)
- 1:39 PM ReleaseProcedure edited by
- (diff)
- 1:39 PM BuildReleasePackages created by
- Adding notes on how to build release packages along with rpms
- 12:01 PM Changeset [4039] by
- Deleted some queries from which the results were not used.
Nov 24, 2010:
- 3:39 PM Ticket #717 (Move some of the hit table buttons to an Extensions button) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
- 3:36 PM Ticket #698 (Move forms out of the FormFactory) closed by
-
fixed: Ticket closed as class
FormFactoryhas been refactored to only … - 3:26 PM Changeset [4038] by
- Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
- 3:20 PM Changeset [4037] by
- Refs #698. Classes/files in client/servlet/ updated in connection with …
- 1:35 PM Changeset [4036] by
- Refs #698. Classes/files updated in connection with exchanging use of …
- 1:01 PM Changeset [4035] by
- Refs #698. Classes/files updated in connection with exchanging use of …
- 12:46 PM Changeset [4034] by
- Refs #698. Classes/files updated in connection with exchanging use of …
- 12:09 PM Changeset [4033] by
- Refs #698. Classes/files action/SetSortColumn.java, …
- 11:58 AM Changeset [4032] by
- Refs #698. Classes/files gui/form/FormFactory.java and …
- 11:41 AM Changeset [4031] by
- Refs #698. Class/file action/file/InspectActiveSpectrumFile.java in …
- 11:21 AM Changeset [4030] by
- Refs #698. Classes/files updated in connection with move of valid …
- 9:44 AM Changeset [4029] by
- Removing unused class
- 9:39 AM Changeset [4028] by
- Removing unused class MenuFactory?
- 9:35 AM Changeset [4027] by
- Refs #698. Classes/files updated in connection with move of valid …
- 8:58 AM Changeset [4026] by
- Refs #698. Classes/files gui/form/FormFactory.java and …
- 8:46 AM Changeset [4025] by
- Refs #698. Classes/files gui/form/FormFactory.java, …
Nov 23, 2010:
- 4:03 PM Changeset [4024] by
- Refs #698. Classes/files updated in connection with move of valid …
- 2:33 PM Changeset [4023] by
- Refs #698. Classes/files gui/form/FormFactory.java and …
- 2:10 PM Changeset [4022] by
- Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
- 1:53 PM Ticket #726 (shared files not visible via ftp) created by
- User A creates a Project and gives user B full access rights. In the …
- 1:22 PM Changeset [4021] by
- Refs #698. Classes/files gui/form/FormFactory.java, …
- 12:50 PM Changeset [4020] by
- Refs #698. Class/file gui/form/FormFactory.java in client/servlet/ …
- 12:08 PM Changeset [4019] by
-
Refs #698. Valid parameter
VInteger VDIRIDremoved from class/file … - 9:53 AM ReleaseProcedure edited by
- Removed steps for upgrading demo server as it's not functioning anymore (diff)
- 9:52 AM Changeset [4018] by
-
Refs #698. Valid parameter
VInteger VGROUPIDmoved from class/file … - 9:52 AM ReleaseProcedure edited by
- Adding instructions on how to generate homepage during release (diff)
- 9:51 AM GenerateHomepage created by
- 8:37 AM Ticket #716 (Remove description in Extension popups) closed by
- fixed
- 8:32 AM Changeset [4017] by
- Refs #698. Sorted valid parameters. This refactoring is considered …
Nov 22, 2010:
- 3:35 PM Changeset [4016] by
- Refs #717. Refs #287. Refs #290. First version of extensions button …
- 2:38 PM Changeset [4015] by
- Refs #698. Removed VROLEPERMISSIONID, VWELLPOSITION, VCONFIRM, …
- 2:32 PM Changeset [4014] by
- Refs #698. Removed VPWD1 and VPWD2 from FormFactory.
- 2:22 PM Changeset [4013] by
- Refs #698. Removed VPROTOCOLFILERESET together with a bunch of unused …
- 2:19 PM Changeset [4012] by
- Refs #698. Removed VPROTOCOLFILERESET from FormFactory.
- 2:03 PM Changeset [4011] by
- Refs #698. Removed method newValueField from FormFactory.
- 1:57 PM Changeset [4010] by
- Refs #698. Removed unused method newSelectLabel in FormFactory.
- 1:48 PM Changeset [4009] by
- Refs #698. Removed method getSecondaryLabeledExtractForm from FormFactory
- 1:14 PM Changeset [4008] by
- Refs #698. Removed methods getUsedSampleFieldset, …
- 12:38 PM Changeset [4007] by
- Refs #698. Removed method getProteinAssemblyFieldset from FormFactory.
- 12:24 PM Changeset [4006] by
- Refs #698. Removed method getSpectrumFileSampleInputForm from FormFactory.
- 11:29 AM Changeset [4005] by
- Refs #698. Moved method getSpectrumPropertiesForm into action …
- 11:23 AM Changeset [4004] by
- Refs #698. Removed unused methods get/setForwardActionId from FormFactory.
- 9:49 AM Changeset [4003] by
- Refs #698. Removed method getSpectrumMassSelectionForm from FormFactory.
- 9:29 AM Changeset [4002] by
- Refs #698. Removed couple of the annotations related constraints in …
- 9:25 AM Changeset [4001] by
- Refs #698. Removed method getAnnotationsForm from FormFactory.
Nov 19, 2010:
- 2:38 PM Ticket #705 (Add modification location and delta score to Mascot import) closed by
- fixed
- 2:37 PM Ticket #701 (Add more info to PRIDE export) closed by
- fixed: The information is now added.
- 12:54 PM Ticket #715 (Windows install fails) closed by
- fixed: Ticket closed as a fix for the problem has been added. Should the …
- 12:49 PM Changeset [4000] by
-
Refs #715. Proteios SE installation script file
install-win.batin … - 12:35 PM Changeset [3999] by
- Fixes #725. Changed random prefix to r. Still keeping support for IPR …
- 12:35 PM Ticket #725 (Change default decoy prefix) closed by
- fixed: (In [3999]) Fixes #725. Changed random prefix to r. Still keeping …
- 12:33 PM Ticket #725 (Change default decoy prefix) created by
- The IPI databases are no longer supported, and people are expected to …
Nov 18, 2010:
- 5:07 PM Installation edited by
- Changed path delimiter for Windows paths from '/' to '\'. (diff)
- 5:04 PM Installation edited by
- Description updated by fixing typo. (diff)
- 2:29 PM Installation edited by
- (diff)
- 2:20 PM Ticket #441 (Use In Project button should be shaded if no project is active) closed by
- worksforme: Ticket closed, as the desired behavior already has been implemented …
- 2:16 PM Ticket #707 (Renaming of search parameter sets) closed by
- fixed: The ticket is closed, as the desired functionality has been added. …
- 2:12 PM Installation edited by
- (diff)
- 2:11 PM Installation edited by
- (diff)
- 2:11 PM Changeset [3998] by
- Refs #707. Refs #362. Refs #287. First version of support for editing …
- 1:14 PM Changeset [3997] by
- Refs #707. Refs #471. First version of support for editing of OMSSA …
- 12:55 PM Changeset [3996] by
- Refs #707. Refs #534. Class/file …
- 12:44 PM Changeset [3995] by
- Refs #698. Removed couple of unused private methods.
- 12:37 PM Changeset [3994] by
- Refs #698. Removed method getHitPeakListForm from FormFactory.
- 12:24 PM Changeset [3993] by
- Refs #707. Refs #362. Class/file …
- 12:19 PM Changeset [3992] by
- Refs #707. Refs #287. English dictionary file locale/en/dictionary in …
- 12:18 PM Changeset [3991] by
- Refs #698. Moved method getHitPeakListForm from FormFactory to action …
- 12:08 PM Changeset [3990] by
- Refs #698. Moved method getPeakListForm from FormFactory into action …
Nov 17, 2010:
- 2:44 PM ReleaseProcedure edited by
- (diff)
- 2:44 PM TagRelease created by
- Adding instructions on how to tag a release
- 2:38 PM ReleaseProcedure edited by
- (diff)
- 2:37 PM UpdateDatabaseSchemaDoc created by
- Adding instructions on how to generate database schema doc
- 2:36 PM Changeset [3989] by
- Refs #707. Refs #287. Refs #290. First version of support for editing …
- 2:29 PM Changeset [3988] by
- Changed my developer status in the about text.
- 2:07 PM Extensions/GettingStarted edited by
- Linking to trunk versions of the examples (diff)
- 2:02 PM Extensions/GettingStarted edited by
- Linking build.xml to trunk version (diff)
- 2:00 PM Changeset [3987] by
- Added example code for extensions that is available from the manual.
- 1:44 PM Changeset [3986] by
- Refs #698. Moved method addHiddenField from FormFactory into Table …
- 1:32 PM Changeset [3985] by
- Refs #698. Removed methods newOriginalQuantityField and …
- 11:23 AM Changeset [3984] by
- Refs #698. Moved method addHiddenField(Form...) from FormFactory into …
- 11:11 AM Changeset [3983] by
- Refs #698. Removing method selectLocalSampleIdWithAllOption from …
- 11:03 AM Changeset [3982] by
- Refs #698. Removing couple of private methods for creating fields in …
- 10:02 AM Changeset [3981] by
- Refs #547. Fixed problem with long response times by setting …
- 9:53 AM Changeset [3980] by
- Refs #698. Removed method getNewProtocolForm from FormFactory
Nov 16, 2010:
- 2:50 PM Ticket #710 (Select multiple databases for Mascot search) closed by
- fixed: Ticket is closed as the desired functionality has been added. Should …
Nov 15, 2010:
- 11:15 AM Changeset [3979] by
- Fixing warning from ant when compiling. Added missing …
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