Timeline



Dec 23, 2010:

10:57 AM Changeset [4091] by olle
Refs #668. Support for running msInspect feature detection from …
10:49 AM Changeset [4090] by olle
Refs #711. Refs #668. Field set show/hide toggle updated to allow the …

Dec 22, 2010:

12:34 PM Changeset [4089] by olle
Refs #668. Refs #287. Support for running msInspect feature detection …
8:45 AM Changeset [4088] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …

Dec 21, 2010:

1:57 PM Changeset [4087] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
1:52 PM Changeset [4086] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …

Dec 20, 2010:

2:35 PM Changeset [4085] by olle
Refs #668. Proteios SE installation and update bat-files for MS …
1:40 PM Changeset [4084] by olle
Refs #668. Initialization script www/WEB-INF/init.sh in …
1:13 PM Changeset [4083] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …

Dec 17, 2010:

10:15 AM Changeset [4082] by olle
Refs #668. Refs #287. the following classes/files were updated to …
9:32 AM Changeset [4081] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …

Dec 16, 2010:

12:58 PM Changeset [4080] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
12:52 PM Changeset [4079] by olle
Refs #668. Addition of a new FileType constant for msInspect …
12:24 PM Changeset [4078] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
12:02 PM Changeset [4077] by olle
Refs #668. Class/file …
10:02 AM Changeset [4076] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
8:41 AM Changeset [4075] by Gregory Vincic
Rewrote class documentation of ActionFactory?

Dec 15, 2010:

3:51 PM Changeset [4074] by olle
Refs #668. Support for running msInspect feature finding from Proteios …
3:00 PM Changeset [4073] by olle
Refs #668. Refs #287. First version of support for running msInspect …
2:28 PM Changeset [4072] by olle
Refs #668. New directory action/msInspect/ in client/servlet/ added.
2:24 PM Changeset [4071] by olle
Refs #668. Support for msInspect properties file added: 1. New …

Dec 14, 2010:

10:54 AM Extensions edited by Gregory Vincic
(diff)

Dec 13, 2010:

2:39 PM ImplementPlugin edited by Gregory Vincic
Linked the javadoc instead of sourcecode (diff)
2:38 PM Extensions/GettingStarted edited by Gregory Vincic
Removing link to ImplementExtension? (diff)
2:26 PM Extensions/GettingStarted edited by Gregory Vincic
(diff)
2:25 PM WikiStart edited by Gregory Vincic
(diff)
2:24 PM Extensions/Manual created by Gregory Vincic
Extensions/Manual → …
2:24 PM WikiStart edited by Gregory Vincic
Added link on frontpage to the ExtensionManual (diff)
10:41 AM Ticket #733 (Add a demo project extension for non-gel based projects) created by Gregory Vincic
There should be some demo data for testing non-gel based projects
8:37 AM Ticket #732 (Starting X!Tandem search crashes when trying to select a parameter set ...) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …

Dec 10, 2010:

12:52 PM Changeset [4070] by olle
Refs #732. Class/file …
12:26 PM Changeset [4069] by olle
Refs #732. Class/file …

Dec 9, 2010:

4:40 PM Changeset [4068] by Fredrik Levander
Bumping version number and changed to dev.
4:11 PM Changeset [4067] by olle
Refs #732. Class/file …
3:43 PM Ticket #732 (Starting X!Tandem search crashes when trying to select a parameter set ...) created by olle
Starting X!Tandem search crashes when trying to select a parameter set …
12:17 PM Changeset [4066] by olle
Refs #435. Class/file io/XTandemParameterSetOptionsUtil.java in …

Dec 8, 2010:

11:25 AM Milestone Proteios SE 2.14.0 completed
- Improve forms with more help
10:03 AM UpdateDatabaseSchemaDoc edited by Gregory Vincic
(diff)
9:46 AM GenerateHomepage edited by Gregory Vincic
(diff)
9:45 AM GenerateHomepage edited by Gregory Vincic
(diff)
9:15 AM ReleaseProcedure edited by Gregory Vincic
(diff)
9:09 AM TagRelease edited by Gregory Vincic
(diff)
9:06 AM Changeset [4065] by Gregory Vincic
Tagging release 2.14.0
8:31 AM TestWebservice edited by Gregory Vincic
(diff)
8:19 AM BuildReleasePackages edited by Gregory Vincic
(diff)
8:18 AM Changeset [4064] by Gregory Vincic
Starting release procedure. Setting version to 2.14.0
8:16 AM ReleaseProcedure edited by Gregory Vincic
Moved schema update step (diff)

Dec 7, 2010:

3:51 PM Changeset [4063] by olle
Refs #435. Class/file plugins/SearchXTandemPlugin.java in plugin/ …
3:17 PM Changeset [4062] by olle
Refs #700. Class/file gui/form/XTandemParameterSetForm.java in …
11:07 AM Changeset [4061] by Gregory Vincic
Cleaning up source code
9:55 AM Ticket #731 (Setup automated javadoc generation) created by Gregory Vincic
I attached a script on the JavaDoc page that could be used for this.
9:44 AM generate-proteios-javadoc.sh attached to JavaDoc by Gregory Vincic
Example of how to setup autogeneration of the javadoc
9:22 AM JavaDoc edited by Gregory Vincic
Added note on javadoc generation (diff)
9:04 AM Changeset [4060] by olle
Refs #287. English dictionary file locale/en/dictionary in …
8:43 AM Changeset [4059] by olle
Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
8:35 AM Ticket #730 (HitComparisonReport labels and fieldset titles need rephrasing) created by Gregory Vincic
The report is done in two steps, the main title should read "Hits …
7:59 AM Ticket #729 (Dangling tags in Home view and others) closed by Gregory Vincic
fixed: (In [4058]) Fixes #729. The filter row is now always generated and …
7:59 AM Changeset [4058] by Gregory Vincic
Fixes #729. The filter row is now always generated and hidden using …

Dec 6, 2010:

3:45 PM Changeset [4057] by olle
Refs #327. Classes/files plugins/HitsComparisonReportPlugin.java and …
3:42 PM Changeset [4056] by olle
Refs #327. Classes/files gui/form/Fieldset.java, …
2:59 PM Changeset [4055] by olle
Refs #327. Ant build file build.xml in api/core/ updated by updating …
2:57 PM Changeset [4054] by olle
Refs #327. Classes/files core/PropertyFilter.java, …
2:34 PM Ticket #729 (Dangling tags in Home view and others) created by Gregory Vincic
This error is generated when there are dom objects created but not …
2:29 PM Ticket #728 (Localization for non localizable value in File -> Select project ...) created by Gregory Vincic
Last entry in File -> Select project menu which displays number of …
1:36 PM Changeset [4053] by olle
Refs #287. English dictionary file locale/en/dictionary in …
12:44 PM Changeset [4052] by olle
Refs #327. Class/file action/directory/ViewActiveDirectory.java in …
11:58 AM Ticket #706 (Delete results for one local sample id from hits table) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:34 AM Changeset [4051] by Gregory Vincic
Removing unchecked warning when retrieving list values from the …

Dec 3, 2010:

3:28 PM Changeset [4050] by olle
Refs #706. Refs #287. Refs #290. Hits table "Clear Hits" button …
3:07 PM Changeset [4049] by olle
Refs #706. Refs #717. Class/file action/hit/ListHits.java in …
2:32 PM Changeset [4048] by olle
Refs #706. Refs #698. Class/file gui/form/ExternalGelIdSelect.java …

Dec 1, 2010:

4:41 PM Ticket #726 (shared files not visible via ftp) closed by olle
fixed: Ticket closed, as the Proteios SE FTP Server has been updated to …
4:01 PM Changeset [4047] by olle
Refs #726. Refs #619. Proteios SE FTP Server updated to improve the …
11:04 AM Changeset [4046] by olle
Refs #726. Refs #619. Class/file coreftpd/ftp_server/MyLS.java in …

Nov 26, 2010:

1:59 PM Changeset [4045] by Gregory Vincic
Updated init.sh script to use SERVICE_PATH setting in WEB-INF/config …
10:31 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:30 AM Changeset [4044] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:41 AM Changeset [4043] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:40 AM Changeset [4042] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
9:16 AM Extensions/SpectrumFileInspector edited by olle
Documentation updated with note that active development of external … (diff)
8:40 AM Changeset [4041] by olle
Refs #727. Class/file action/file/InspectSpectrumFileExtension.java in …
8:33 AM Ticket #727 (Spectrum File Inspector Extension should be made a Core Extension) created by olle
With increasing importance of spectrum files relative to peak lists …

Nov 25, 2010:

2:58 PM Ticket #720 (Add context for ViewFile) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:49 PM Changeset [4040] by olle
Refs #720. Refs #554. Refs #287. Refs #290. First version of file type …
1:59 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:58 PM ReleaseProcedure edited by Gregory Vincic
Adding links to mailinglist, twitter and facebook (diff)
1:55 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:54 PM ReleaseProcedure edited by Gregory Vincic
Linked NewLinuxInstall2 (diff)
1:52 PM ReleaseProcedure edited by Gregory Vincic
Linked TestWebservice page (diff)
1:52 PM TestWebservice created by Gregory Vincic
1:43 PM ReleaseProcedure edited by Gregory Vincic
Reusing BuildReleasePackages information in second section of the procedure (diff)
1:40 PM GenerateHomepage edited by Gregory Vincic
(diff)
1:40 PM GenerateHomepage edited by Gregory Vincic
(diff)
1:39 PM TagRelease edited by Gregory Vincic
(diff)
1:39 PM ReleaseProcedure edited by Gregory Vincic
(diff)
1:39 PM BuildReleasePackages created by Gregory Vincic
Adding notes on how to build release packages along with rpms
12:01 PM Changeset [4039] by Fredrik Levander
Deleted some queries from which the results were not used.
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