Timeline



Mar 16, 2011:

5:08 PM Milestone Proteios SE 2.15.0 completed
Milestone closed as Proteios SE 2.15.0 is released.
12:31 PM Releases edited by Fredrik Levander
(diff)
12:21 PM Releases edited by Fredrik Levander
Added release info abou 2.14 and 2.15 (diff)
12:00 PM Changeset [4171] by olle
Tagging release 2.15.0

Mar 15, 2011:

1:13 PM Changeset [4170] by olle
Outermost ant build file build.xml updated by changing value of …
1:01 PM Changeset [4169] by olle
Refs #582. Refs #287. Pop-up menu label "Use table preferences:" …
12:42 PM Ticket #747 (Viewing trashcan contents crashes when trying to view items that are ...) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
12:41 PM Changeset [4168] by olle
Refs #747. Class/file action/read/ListTrash.java in client/servlet/ …
12:28 PM Ticket #747 (Viewing trashcan contents crashes when trying to view items that are ...) created by olle
Viewing trashcan contents crashes when trying to view items that are …

Mar 14, 2011:

3:57 PM Ticket #746 (Documentation Update for Proteios SE 2.15.0.) closed by olle
fixed: Ticket closed as the documentation wiki has been updated.
3:56 PM Ticket #744 (Run OpenMS feature finding from Proteios) closed by olle
fixed: Ticket closed as a first version of support for running OpenMS …
3:55 PM Ticket #668 (Run msInspect feature finding from Proteios) closed by olle
fixed: Ticket closed as a first version of support for running msInspect from …
8:28 AM Changeset [4167] by olle
Refs #746. Classes/files in api/core/ updated in javadoc by removal of …
8:21 AM Changeset [4166] by olle
Refs #744. Refs #746. Class/file plugins/RunOpenMsPlugin.java in …
8:19 AM Changeset [4165] by olle
Refs #668. Refs #746. Class/file plugins/RunMsInspectPlugin.java in …

Mar 11, 2011:

4:18 PM SiteMap edited by olle
Added entry for FeatureDetection (Feature Detection). (diff)
4:07 PM UserGuide edited by olle
Added entry for FeatureDetection (Feature Detection). (diff)
4:03 PM FeatureDetection created by olle
First version
2:46 PM Changeset [4164] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
2:15 PM Ticket #736 (quantitative comparison report) closed by olle
fixed: Ticket closed as the first version of support for quantitative hit …
1:46 PM SiteMap edited by olle
Added entry for QuantitativeHitsComparisonReport (Quantitative Hits … (diff)
1:40 PM SiteMap edited by olle
Added entry for NonQuantitativeHitsComparisonReport (Non-Quantitative … (diff)
1:31 PM SiteMap edited by olle
Added entry for HitsComparisonReport (Hits Comparison Report). (diff)
1:20 PM UserGuide edited by olle
Section "For Users" updated with new link for "Hits comparison report" (diff)
1:16 PM HitsComparisonReport created by olle
First version
1:14 PM QuantitativeHitsComparisonReport created by olle
First version
10:03 AM Changeset [4163] by olle
Refs #736. Quantitative hits comparison updated to set MIME type of …
10:02 AM Changeset [4162] by olle
Refs #639. Refs #535. Hits comparison updated to set MIME type of …
9:40 AM NonQuantitativeHitsComparisonReport created by olle
First version

Mar 10, 2011:

2:53 PM HitsReportTablePrideXmlExport edited by olle
Section "How to Export Hits Data to PRIDE XML" updated in menu selection (diff)
2:30 PM UserGuide edited by olle
Section "Working with projects" updated in text for active project (diff)
1:50 PM UserGuide edited by olle
Section "Working with projects" updated in menu selections (diff)
12:25 PM WorkingWithProjects edited by olle
Page expanded and existing info updated (diff)
8:58 AM WorkingWithFiles edited by olle
Page updated with page outline command at top (diff)

Mar 9, 2011:

4:47 PM UserGuide edited by olle
Section "Protein identification reports" updated in menu selections (diff)
4:16 PM UserGuide edited by olle
Page updated on running plug-ins and importing peaklist files (diff)
3:14 PM WorkingWithFiles edited by olle
Page expanded and info on demo file upload updated (diff)
2:44 PM Ticket #746 (Documentation Update for Proteios SE 2.15.0.) created by olle
This ticket collects various changes in the Proteios SE documentation …
2:34 PM FTPServerUsage edited by olle
Added wiki esacpe character to "Unix/Linux?". (diff)
11:50 AM XTandemSearchEngineInterface edited by olle
Added wiki escape character to tile "Creating/Editing? an X!Tabden … (diff)

Mar 8, 2011:

4:50 PM Ticket #741 (Update and deletion of annotations) closed by olle
fixed: Ticket closed as annotation management for files and biomaterials has …
4:07 PM Changeset [4161] by olle
Refs #741. Refs #339. Annotation management for biomaterials, i.e. …
3:03 PM Changeset [4160] by olle
Refs #741. Class/file action/file/ViewActiveFile.java in …
12:04 PM Changeset [4159] by olle
Refs #741. Refs #339. View action defined for items when listing …
11:11 AM Changeset [4158] by olle
Refs #741. Refs #339. Annotation management for biomaterials, i.e. …

Mar 7, 2011:

8:52 AM ServerAdministration edited by olle
Added section on configuration of OpenMS feature detection. (diff)

Mar 4, 2011:

5:09 PM Changeset [4157] by olle
Refs #744. Class/file plugins/RunOpenMsPlugin.java in plugin/ updated …
2:39 PM Changeset [4156] by Fredrik Levander
Refs #614. Added some more logged info.
12:36 PM Ticket #740 (Files for hits import registration from biomaterial annotations) closed by olle
fixed: Ticket closed as the requested functionality has been added.
12:10 PM Changeset [4155] by olle
Refs #740. Refs #392. Class/file …
9:10 AM Changeset [4154] by olle
Refs #740. Refs #392. Refs #287. Non gel-based hits import updated to …
8:12 AM Changeset [4153] by olle
Refs #744. Proteios SE installation and update bat-files for MS …

Mar 3, 2011:

5:00 PM Changeset [4152] by Fredrik Levander
Refs #614. Changing queries to allow matching with related hits also …
4:54 PM Changeset [4151] by olle
Refs #744. Initialization script www/WEB-INF/init.sh in …
4:48 PM Changeset [4150] by olle
Refs #744. Initialization script www/WEB-INF/init.sh in …
4:37 PM Changeset [4149] by olle
Refs #744. Outermost Ant build.xml file updated for target …
3:14 PM Changeset [4148] by olle
Refs #744. Refs #287. First version of support for running OpenMS …
2:48 PM Changeset [4147] by olle
Refs #744. Addition of a new FileType constant for OpenMS features: …
2:41 PM Changeset [4146] by olle
Refs #744. New directory action/openMs/ in client/servlet/ added.
2:39 PM Changeset [4145] by olle
Refs #744. OpenMS properties template file conf/openms.properties.in …
2:33 PM Changeset [4144] by olle
Refs #744. Support for OpenMS properties file added: 1. New OpenMS …
1:24 PM Changeset [4143] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …
11:08 AM Ticket #745 (Protein assembly for all samples at once) created by Fredrik Levander
It should be possible to perform protein assembly for all samples in …
10:50 AM Changeset [4142] by Fredrik Levander
Refs #614. Making several attempts to read mzML/mzXML file in case of …

Mar 2, 2011:

10:14 AM Changeset [4141] by olle
Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ …

Mar 1, 2011:

12:22 PM Changeset [4140] by Fredrik Levander
Refs #743. Corrected log level.
12:10 PM Ticket #744 (Run OpenMS feature finding from Proteios) created by olle
It should be possible to run external binary programs PeakPicker and …
11:40 AM Ticket #743 (Protein level quantification using isobaric labels) closed by Fredrik Levander
fixed: (In [4139]) Fixes #743. Added option for only using peptides unique to …
11:40 AM Changeset [4139] by Fredrik Levander
Fixes #743. Added option for only using peptides unique to group for …
11:22 AM Ticket #743 (Protein level quantification using isobaric labels) created by Fredrik Levander
For protein quantification using isobaric labels an option to only use …

Feb 23, 2011:

8:32 AM Ticket #733 (Add a demo project extension for non-gel based projects) closed by olle
fixed: Ticket closed as the requested functionality has been added.

Feb 22, 2011:

5:09 PM Changeset [4138] by olle
Refs #733. First version of uploading of demo files for non gel-based …
3:25 PM Changeset [4137] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
3:05 PM Changeset [4136] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
1:45 PM Changeset [4135] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
1:27 PM Changeset [4134] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
12:00 PM Ticket #742 (Multiple annotation types with same name should not be allowed) closed by Fredrik Levander
fixed: (In [4133]) Fixes #742. Note that it is currently not possible to have …
12:00 PM Changeset [4133] by Fredrik Levander
Fixes #742. Note that it is currently not possible to have more than …
11:14 AM Ticket #742 (Multiple annotation types with same name should not be allowed) created by Fredrik Levander
It is currently possible to create multiple annotation types with the …
9:33 AM Changeset [4132] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
8:58 AM Ticket #734 (Routine for uploading demo files should be made more robust and forgiving) closed by olle
fixed: Ticket closed as the code has been updated to allow source files to be …
8:54 AM Changeset [4131] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
8:30 AM Changeset [4130] by olle
Refs #734. Class/file action/project/UploadDemoFiles.java in …
8:03 AM Ticket #734 (Routine for uploading demo files should be made more robust and forgiving) reopened by olle
Ticket reopened to allow source files to be placed in different …

Feb 21, 2011:

2:44 PM SiteMap edited by olle
Added entry for LabelFree (Label-free quantitative analysis). (diff)
2:06 PM Changeset [4129] by olle
Refs #741. Class/file action/write/AddAnnotation.java in …

Feb 18, 2011:

3:51 PM Changeset [4128] by olle
Refs #741. Class/file action/annotation/DeleteAnnotations.java in …
1:05 PM Changeset [4127] by Fredrik Levander
Refs #741. Added functionality for updating values by clicking on them …
1:00 PM Ticket #741 (Update and deletion of annotations) created by Fredrik Levander
It should be possible to delete annotations for a specific object. …
12:48 PM Changeset [4126] by olle
Refs #740. Refs #392. Refs #287. Non gel-based hits import updated to …

Feb 17, 2011:

12:12 PM Changeset [4125] by Fredrik Levander
typo
12:11 PM Changeset [4124] by Fredrik Levander
Refs #651. Making sure that fraction is lower case.
11:53 AM Changeset [4123] by olle
Refs #740. Refs #290. Non gel-based hits import updated with icon …

Feb 16, 2011:

11:08 AM Changeset [4122] by olle
Refs #740. Refs #392. Refs #287. Non gel-based hits import updated …
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