Timeline



Jun 17, 2013:

3:44 PM Ticket #810 (PRIDE export of multiple samples) closed by Fredrik Levander
fixed: (In [4501]) Fixes #810. Changed to multiple selection of samples, and …
3:44 PM Changeset [4501] by Fredrik Levander
Fixes #810. Changed to multiple selection of samples, and generation …
3:42 PM Ticket #810 (PRIDE export of multiple samples) created by Fredrik Levander
PRIDE XML export (#405) should be updated so that it is possible to …

Jun 14, 2013:

3:54 PM Changeset [4500] by olle
Refs #807. PRIDE XML export updated to show link to NEWT ontology …
3:08 PM Changeset [4499] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …
2:36 PM Changeset [4498] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …
12:35 PM Changeset [4497] by olle
Refs #807. PRIDE XML export updated to search for an alternative mzML …
7:32 AM Changeset [4496] by olle
Refs #807. PRIDE XML export updated to exclude Hit table entries with …

Jun 13, 2013:

4:39 PM Changeset [4495] by Fredrik Levander
Refs #807. Fix to not retrieve instrument serial number instead of …
3:29 PM Changeset [4494] by Fredrik Levander
Refs #807. Throwing exception when no mzData file to use for export of …
2:45 PM Changeset [4493] by Fredrik Levander
Refs #809. Refs #807. Update of PRIDE xml peptide modification writing …
2:16 PM Ticket #808 (MGF to mzData Converter) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:15 PM Ticket #805 (Support for simplifying ProteomeXchange submission) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:14 PM Ticket #804 (Administrator option to require that a user must change password at ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:12 PM Ticket #803 (It should be possible to define biomaterial - file associations from ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:10 PM Ticket #802 (Hits import for replicates) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:04 PM Ticket #792 (Support for comparison of technical replicates) closed by olle
fixed: Ticket closed as the requested functionality has been added.
11:57 AM Changeset [4492] by olle
Refs #515. Refs #807. Classes/files io/XMLCrudeWriterImpl.java and …
11:49 AM Changeset [4491] by olle
Refs #807. PRIDE XML export updated to exclude Hit table entries with …

Jun 12, 2013:

12:20 PM Changeset [4490] by olle
Refs #807. Class/file action/hit/CreatePrideExportJob.java in …
12:10 PM Changeset [4489] by olle
Refs #807. PRIDE XML export updated to allow addition of species …

Jun 11, 2013:

4:34 PM Changeset [4488] by olle
Refs #807. Class/file plugins/MgfToMzDataPlugin.java in plugin/
3:35 PM Changeset [4487] by olle
Refs #807. PRIDE XML export is updated for adding sample and contact …
11:21 AM Changeset [4486] by olle
Refs #807. PRIDE XML export is updated to retrieve instrument part in …

Jun 10, 2013:

5:00 PM Changeset [4485] by Fredrik Levander
Refs #809. Initial refactoring to make functions for retrieval of …
4:51 PM Ticket #809 (PRIDE export of modifications) created by Fredrik Levander
The support for export of peptide modifications in PRIDE XML should be …
12:45 PM Changeset [4484] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …
11:40 AM Changeset [4483] by olle
Refs #808. MGF to mzData converter in class/file …
11:13 AM Changeset [4482] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …

Jun 5, 2013:

12:37 PM Changeset [4481] by olle
Refs #807. PRIDE XML export is updated to convert selected cvParam …
12:18 PM Changeset [4480] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …

Jun 4, 2013:

2:58 PM Changeset [4479] by olle
Refs #807. PRIDE XML export is updated to support automatic conversion …

Jun 3, 2013:

3:50 PM Changeset [4478] by olle
Refs #808. Refs #807. MGF to mzData converter in class/file …
9:57 AM Changeset [4477] by olle
Refs #808. MGF to mzData converter in class/file …

May 31, 2013:

4:32 PM Changeset [4476] by olle
Refs #808. Added MGF to mzData plug-in class/file …
3:44 PM Ticket #808 (MGF to mzData Converter) created by olle
A plug-in for converting MGF files to mzData files could be useful in …

May 30, 2013:

4:29 PM Ticket #807 (PRIDE export of MGF-based searches) created by Fredrik Levander
Currently PRIDE export only supports mzData-based searches. However, …
4:13 PM Changeset [4475] by olle
Refs #805. Support for simplifying ProteomeXchange submission by …

May 28, 2013:

4:27 PM Changeset [4474] by Fredrik Levander
Refs #776. Added possibility for alternate tomcat paths, and some …
4:15 PM Ticket #806 (Ant svn upgrade) closed by Fredrik Levander
fixed: (In [4473]) Fixes #806. Update svnant library files, and build files …
4:15 PM Changeset [4473] by Fredrik Levander
Fixes #806. Update svnant library files, and build files to use …
4:01 PM Ticket #806 (Ant svn upgrade) created by Fredrik Levander
Current build.xml doesn't retrieve revision number properly if svn …

May 27, 2013:

1:20 PM Changeset [4472] by olle
Refs #805. Refs #406. Support for simplifying ProteomeXchange …

May 23, 2013:

2:02 PM Changeset [4471] by olle
Refs #805. Active project menu updated with new cascade item …
11:22 AM Changeset [4470] by olle
Refs #805. ProteomeXchange submission changed to a hit context …

May 22, 2013:

4:48 PM Changeset [4469] by olle
Refs #805. Class/file action/file/ProteomeXchangeExport.java in …
2:53 PM Changeset [4468] by olle
Refs #805. Support for simplifying ProteomeXchange submission by …

May 20, 2013:

9:46 AM Changeset [4467] by olle
Refs #805. Support for simplifying ProteomeXchange submission by …
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