source: trunk/src/org

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Diff Rev Age Author Log Message
(edit) @1536   16 years fredrik Bug fix: The protein hits report was filtered on evalues, even if that …
(edit) @1533   16 years fredrik Removed some decimals from summary message.
(edit) @1532   16 years fredrik Combined report changed to allow for comparison on peptide level as …
(edit) @1531   16 years fredrik Tandem input bug corrected. peptides didn't have the correct parent …
(edit) @1530   16 years fredrik
(edit) @1529   16 years fredrik Typo
(edit) @1528   16 years fredrik Major revision of standard protein report to accomodate large lists. …
(edit) @1526   16 years fredrik Now checking if there really are results from more than one search …
(edit) @1525   16 years fredrik Preparing for release 1.1.4. Removed possibility of listing x best …
(edit) @1523   16 years fredrik Tandem date filtering corrected.
(edit) @1522   16 years fredrik Corrected tag name for import of Mascot XML result. Now possible to …
(edit) @1521   16 years fredrik Adjusted GUI for batch DTA import
(edit) @1520   16 years fredrik Added import of DTA files (merged or single). Instrument parameters …
(edit) @1516   16 years fredrik Modified the counting of false positives
(edit) @1501   16 years fredrik Allowed export of reports by right-clicking
(edit) @1500   16 years fredrik More conservative statistics in combined report
(edit) @1499   16 years fredrik New default settings for report
(edit) @1496   16 years fredrik Updated reports to allow for different prefixes for reverse database …
(edit) @1495   17 years fredrik Remake of Combined Protein Hits Report
(edit) @1494   17 years fredrik Also 1D gel
(edit) @1493   17 years fredrik false ratio calculation
(edit) @1492   17 years fredrik select error ratio
(edit) @1487   17 years fredrik bug fix
(edit) @1486   17 years fredrik Now removing subsequence hits from CombinedProteinHitsReport?
(edit) @1472   17 years fredrik batch mzData/pkl import changed so that target_id can be set
(edit) @1471   17 years fredrik Protein Hits Report date filtering adjusted to filter for whole dates
(edit) @1469   17 years fredrik Improved sorting of combine protein hits report
(edit) @1468   17 years fredrik Combined protein hits report export to file added
(edit) @1467   17 years fredrik GUI changes for new combined protein hits report and changed import of …
(edit) @1466   17 years fredrik New query function added to SQL connection. Writing queries to console …
(edit) @1465   17 years fredrik Changed MzData? so that only one mzAnalysis child with a given …
(edit) @1464   17 years fredrik New combined Mascot and Tandem results report added
(edit) @1463   17 years fredrik Changed tandem import to convert protein expect to real expectation value
(edit) @1461   17 years fredrik Opimised ProteinHitsReport?
(edit) @1460   17 years fredrik Opimised evictElement
(edit) @1458   17 years fredrik Not saving a lot of temp files when importing mzData anymore
(edit) @1457   17 years fredrik Delete message added and PeakList? batch import in separate SQLEvictSession
(edit) @1454   17 years fredrik Now using separate session and evict to avoid filling the hibernate …
(edit) @1449   17 years fredrik Proteios 1.1
(edit) @1448   17 years fredrik Proteios 1.1
(edit) @1447   17 years fredrik Export version 1.1. The export will build the entire DOM tree in …
(edit) @1446   17 years fredrik Update databases to 1.1 by XSL
(edit) @1442   17 years fredrik mzdata batch export rewritten to minimise problem with cache filling up
(edit) @1441   17 years fredrik Some memory optimisation. More to be done!
(edit) @1440   17 years fredrik New getElements function which will query for elements with given …
(edit) @1439   17 years fredrik Batch import of PKL / mzData changed to be more memory efficient
(edit) @1437   17 years fredrik Now also generating the obligatory 'activation' element
(edit) @1436   17 years fredrik Now protein hits starts at 100000
(edit) @1435   17 years fredrik bug fix. Now pI is calculated too
(edit) @1434   17 years Jari Häkkinen Added svn:eol-style and svn:keywords properties.
(edit) @1432   17 years Jari Häkkinen Removed debug printouts.
(edit) @1429   17 years fredrik Major DB model change
(edit) @1428   17 years fredrik bug fix. lastIndexOf
(edit) @1427   17 years fredrik Batch import of PKL / mzData to gel added. Importers modified to …
(edit) @1425   17 years fredrik PKL import.
(edit) @1424   17 years fredrik Now retaining processing parameters from QTOF PLGS files
(edit) @1423   17 years fredrik Parsing of inputAccessionNumber added
(edit) @1422   17 years fredrik Tandem import added. Proton mass adjusted in Piums import and Gel report
(edit) @1420   17 years fredrik RMS now calculated for Mascot searches too.
(edit) @1419   17 years fredrik Pepex and Pepfil imports retaining parameters. Mascot import adjusted …
(edit) @1418   17 years fredrik Now unlocking path again after MzData? batch export
(edit) @1417   17 years fredrik Now peak masses will always be MH+ after pepex and pepfil imports
(edit) @1416   17 years fredrik Support for IPI accession numbers. External info from srs.ebi.ac.uk. …
(edit) @1413   17 years fredrik Now parsin more elements in Piums and Mascot imports. Getting …
(edit) @1412   17 years fredrik Batch MzData? export from Gels added
(edit) @1411   17 years fredrik Removed system.out
(edit) @1410   17 years fredrik Updated protein hits report
(edit) @1409   17 years fredrik Import of mascot search results by right-clicking on node
(edit) @1408   17 years fredrik IPI URL retrieval
(edit) @1407   17 years fredrik ok
(edit) @1405   17 years fredrik Update in database model. Added accession_number to Lsid elements and …
(edit) @1404   17 years fredrik Now returning associated spectrum
(edit) @1403   17 years fredrik Bug fix. Now target_id and target_position of MzData? are matched correctly
(edit) @1402   17 years fredrik New abstract class LsidElement?.
(edit) @1401   17 years fredrik PKL export corrected and add to all Elements added
(edit) @1400   17 years fredrik New results sorting
(edit) @1399   17 years fredrik New getGrandChildren functions
(edit) @1398   17 years fredrik Adjusted Proteins in Gel report after publishing guidelines
(edit) @1397   17 years fredrik Added missing class
(edit) @1396   17 years fredrik Added missing classes
(edit) @1395   17 years fredrik Removed parts that are not used anymore
(edit) @1394   17 years fredrik Corrected LSID parsing
(edit) @1391   17 years fredrik Upgraded report for new model and Mascot results
(edit) @1390   17 years fredrik Majore revision of datamodel.
(edit) @1389   17 years fredrik Majore revision of datamodel.
(edit) @1388   17 years fredrik Majore revision of datamodel. Mascot and Piums imports
(edit) @1387   17 years fredrik Majore revision of datamodel
(edit) @1386   17 years fredrik Majore revision of datamodel
(edit) @1382   17 years Linus Göransson Fixed annoying error logging when choosing cancel at login dialog.
(edit) @1380   17 years fredrik Export started meassage added
(edit) @1379   17 years fredrik Now moving within a data connection instead of adding
(edit) @1378   17 years fredrik New move function
(edit) @1374   17 years Linus Göransson Fixed so the login server can be password-protected
(edit) @1373   17 years Linus Göransson Login dialog system, including a template hibernate properties file.
(edit) @1357   17 years per Refixed external viewing after svn mess up.
(edit) @1355   17 years per Copyright notice + author name.
(edit) @1346   17 years per ImporterUtil? -> SQLEvictConnection.
(edit) @1345   17 years per Copyright notice.
(edit) @1344   17 years per Preparing for 1.0.
(edit) @1343   17 years per Hibernate 3.
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