1 | #ifndef theplu_yat_omic_config_bam |
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2 | #define theplu_yat_omic_config_bam |
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3 | |
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4 | // $Id: config_bam.h 2928 2012-12-25 23:20:10Z peter $ |
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5 | // |
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6 | // Copyright (C) 2012 Peter Johansson |
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7 | // |
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8 | // This program is free software; you can redistribute it and/or modify |
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9 | // it under the terms of the GNU General Public License as published by |
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10 | // the Free Software Foundation; either version 3 of the License, or |
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11 | // (at your option) any later version. |
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12 | // |
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13 | // This program is distributed in the hope that it will be useful, but |
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14 | // WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 | // General Public License for more details. |
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17 | // |
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18 | // You should have received a copy of the GNU General Public License |
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19 | // along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 | |
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21 | /* |
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22 | The purpose of this file is to cater for different installation |
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23 | styles. As samtools' Makefile contains no install rule, different |
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24 | distributions have come up with different ideas where to put |
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25 | samtools' header files. Red Hat put them in '/usr/innclude/bam' |
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26 | whereas Ubuntu put them in '/usr/include/samtools/'. We could solve |
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27 | this by #including <bam.h> and then add appropriate include path |
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28 | (-I) flags to the compiler, but in order to support arbitrary |
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29 | PREFIX we instead choose to #define macros BAM_HEADER and |
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30 | SAM_HEADER depending on we found the bam headers (at configure |
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31 | time) as <bam.h>, <bam/bam.h>, or <samtools/bam.h>. |
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32 | */ |
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33 | |
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34 | #include "yat/utility/config_public.h" |
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35 | |
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36 | #ifdef HAVE_BAM_H |
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37 | # define YAT_BAM_HEADER "bam.h" |
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38 | # define YAT_SAM_HEADER "sam.h" |
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39 | #else |
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40 | # ifdef HAVE_BAM_BAM_H |
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41 | # define YAT_BAM_HEADER "bam/bam.h" |
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42 | # define YAT_SAM_HEADER "bam/sam.h" |
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43 | # else |
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44 | # ifdef HAVE_SAMTOOLS_BAM_H |
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45 | # define YAT_BAM_HEADER "samtools/bam.h" |
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46 | # define YAT_SAM_HEADER "samtools/sam.h" |
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47 | # endif |
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48 | # endif |
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49 | #endif |
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50 | |
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51 | #endif |
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