source: branches/0.13-stable/yat/omic @ 3437

Name Size Rev Age Author Last Change
../
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
phred.cc 984 bytes 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
GFF2.h 1.1 KB 3114   8 years Peter update copyright years
GFF3.cc 1.1 KB 2919   9 years Peter update copyright years
GFF3.h 1.1 KB 3114   8 years Peter update copyright years
GFF2.cc 1.2 KB 2919   9 years Peter update copyright years
phred.h 1.2 KB 3326   7 years Peter use same variable name (p) in docs as in argument list
BamReadFilter.cc 1.2 KB 3417   6 years Peter updating copyright statements
BamWriteIterator.cc 1.2 KB 3114   8 years Peter update copyright years
BamPair.cc 1.7 KB 3176   8 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
algorithm.h 1.9 KB 3295   7 years Peter merge release 0.12 into trunk
config_bam.h 2.0 KB 3428   6 years Peter avoid referring to deprecated option
GenomicPosition.cc 2.1 KB 2919   9 years Peter update copyright years
BamReadFilter.h 2.3 KB 3363   7 years Peter improve docs. refs #794
BamWriteIterator.h 2.4 KB 3147   8 years Peter add missing public
Makefile.am 2.4 KB 3417   6 years Peter updating copyright statements
BamPair.h 2.6 KB 3176   8 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
DNA.cc 2.8 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
BamReadIterator.cc 3.0 KB 3362   7 years Peter avoid temp variable. refs #794
GenomicPosition.h 3.3 KB 3114   8 years Peter update copyright years
GFF.h 3.3 KB 3114   8 years Peter update copyright years
GFF.cc 3.6 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Codon.h 3.8 KB 3114   8 years Peter update copyright years
BamReadIterator.h 4.0 KB 3360   7 years Peter update copyright years
DNA.h 4.3 KB 3114   8 years Peter update copyright years
BamHeader.h 4.6 KB 3417   6 years Peter updating copyright statements
Codon.cc 4.7 KB 3330   7 years Peter update copyright years
BamFile.cc 4.7 KB 3417   6 years Peter updating copyright statements
BamPairIterator.h 6.9 KB 3295   7 years Peter merge release 0.12 into trunk
BamHeader.cc 7.1 KB 3421   6 years Peter fix typo (causing compilation error)
BamFile.h 7.3 KB 3363   7 years Peter improve docs. refs #794
Pileup.h 8.5 KB 3336   7 years Peter closes #816
BamRead.cc 10.6 KB 3398   7 years Peter refs #794 Global arrays bam_nt16_stable and bam_nt16_rev_table in …
BamRead.h 11.2 KB 3398   7 years Peter refs #794 Global arrays bam_nt16_stable and bam_nt16_rev_table in …
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