source: branches/0.7-stable/NEWS @ 2402

$Id: NEWS 2402 2011-01-10 17:44:02Z peter $

See the end of this file for copyrights and conditions.

yat 0.7.x series from http://dev.thep.lu.se/yat/svn/branches/0.7-stable

version 0.7.1 (released NOT YET)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7.1

version 0.7 (released 8 January 2011)

• new namespace theplu::yat::omic
• Constructors *Lookup(Matrix, Index, bool) are deprecated (#543)
• dvi, ps and pdf docs are no longer generated
• utility::load functions now work with std::string as well.

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.7

yat 0.6.x series from http://dev.thep.lu.se/yat/svn/branches/0.6-stable

Version 0.6.3 (released 21 December 2010)

• fixed overflow in statistics::Fisher (#638)
• fixed bug that double was hard-coded in function load<T>(6) (r2271)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.3

Version 0.6.2 (released 18 May 2010)

• fixed bug with merge when result is weighted (r2251)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.2

Version 0.6.1 (released 14 March 2010)

• fixed bug with yat-config --ldflags (#615)
• fixed bug in FileUtil::permission when file does not exist (#617)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6.1

Version 0.6 (released 21 February 2010)

• Boost 1.35 is now required (#603)
• new configure option --with-gsl (#544)
• configure option --with-gsl-prefix is deprecated (#544)
• configure option --with-gsl-exec-prefix is deprecated (#544)
• Behavior of operator==(DataWeightProxy?, DataWeightProxy?) is modified (#578)
• several constructors in namespace random are now declared explicit (#571)
• pair_first_iterator and pair_second_iterator now work with const_iterator (ticket:562)
• Passing by const& in KolmogorovSmirnov::Element::operator< (r2064)
• classes OptionInFile? and OptionOutFile? are deprecated (ticket:521)
• DataWeight? comparison operators were changed in case of NaN (ticket:536)
• new option --libs-without-cblas in yat-config (ticket:523)
• blas is no longer hard-coded into libyat.so and libyat.la (ticket:518)
• using unsigned long int (rather than signed) in SVN::max_epoch (ticket:506)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.6

Version 0.5.6 (released 24 December 2009)

• Fixed bugs in EnsembleBuilder::predict (bugs #567 and #579)
• Corrected dependency libs in libyat.la (bug #573)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.6

Version 0.5.5 (released 5 November 2009)

• SVM::predict is calculated as geometric distance (issue #542)
• detection of GSL is improved (issue #558)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.5

Version 0.5.4 (released 12 June 2009)

• Disable dvi ps and pdf documentation in case of doxygen 1.5.8 (issue #548)
• improved uninstalled yat-config so it works in VPATH build (issue #539)
• improved documentation

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.4

Version 0.5.3 (released 7 May 2009)

• fixed serious bug in qQuantileNormalization related to sorting with NaNs? in vectors (issue #535). VectorMutable? and Percentiler classes were affected with the same issue.
• fixed problem with running configure on 64-bit CentOS (issue #527)
• make check works again (issue #528)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.3

Version 0.5.2 (released 17 March 2009)

• fixed compilation error in IGP (issue #503)
• fixed incorrect error message from CommandLine? (issue #508)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5.2

Version 0.5.1 (released 26 February 2009)

• libtool version number was corrected (see r1833)

Version 0.5 (released 24 February 2009)

• Upgraded to GLPv3
• yat now requires GSL 1.8 or later
• yat now requires Boost 1.33 or later
• Imlicit conversion between Vector and its Views disabled (ticket:467)
• Averager::add and AveragerPair::add take a _signed_ long (ticket:361)
• IteratorPolicy? removed (ticket:398)
• MatrixLookupWeighted?(const MatrixLookup?&) modified (ticket:396)
• Option::parse and OptionArg::do_parse takes references (ticket:418)
• is_int now depends on numerical_limits for inf and NaN treatment
• Similar for is_float. See revision [1312] for details.
• config.h is no longer installed
• Copy and assignment are now allowed for KolmogorovSmirnov?
• is_int(1), is_float(1), is_float(1) are deprecated use is<T>
• percentile(3) is deprecated, use percentile2(3)
• Target::operator[] is deprecated, use Target::operator()

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.5

Version 0.4.3 (released 23 January 2009)

• Fisher::p_value is now correct (bug #461)
• Fisher::oddsratio is now correct (bug #460)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.3

Version 0.4.2 (released 25 August 2008)

• FileUtil? can now handle large files (#378)
• x variable is trained in regression::Local::fit() (#423)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.2

Version 0.4.1 (released 14 May 2008)

• Files needed for build of documentation is included in distribution (#365)

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4.1

Version 0.4 (released 11 April 2008)

• Class vector was split into Vector, VectorView? and VectorConstView?
• Class matrix was renamed to Matrix
• Containers, e.g. Vector, now have iterators.
• EnsembleBuilder? and SubSetGenerator? were refactored and are now templates
• SupervisedClassifier? is now a pure interface class
• SVM is not inherited from SupervisedClassifier?
• NCC was refactored and is now a template
• Distance interfaces against iterators
• interface of median, percentile, and mad functions are modified. They now take iterators rather than containers.
• is_double(), is_int(), and is_float() return true also when string is a nan or inf.
• add_values function in Averagers replaced by iterator interface

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.4

Version 0.3.1 (released 28 April 2007)

• Bugfix release

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.3.1

Version 0.3 (released 9 April 2007)

• First public release

A complete list of closed tickets can be found here
http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.3+%28Public+release%29

Copyright (C) 2003, 2006 Jari Häkkinen
Copyright (C) 2007, 2008, 2009 Jari Häkkinen, Peter Johansson
Copyright (C) 2010, 2011 Peter Johansson
This file is part of yat library, http://dev.thep.lu.se/yat
The yat library is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License as
published by the Free Software Foundation; either version 3 of the
License, or (at your option) any later version.
The yat library is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with yat. If not, see <http://www.gnu.org/licenses/>.