source: branches/kendall-score/yat/utility/Makefile.am @ 4064

Last change on this file since 4064 was 4064, checked in by Peter, 13 months ago

first functioning version (tests pass) of Kendall class using the Ranking class. Split out the code in separate header and source files. Ranking class is still slow (linear) so Kendall::score is still quadratic. refs #710

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1## $Id: Makefile.am 4064 2021-08-05 05:36:32Z peter $
2
3# Copyright (C) 2005, 2006, 2007, 2008 Jari Häkkinen, Peter Johansson
4# Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
5#
6# This file is part of the yat library, http://dev.thep.lu.se/yat
7#
8# The yat library is free software; you can redistribute it and/or
9# modify it under the terms of the GNU General Public License as
10# published by the Free Software Foundation; either version 3 of the
11# License, or (at your option) any later version.
12#
13# The yat library is distributed in the hope that it will be useful,
14# but WITHOUT ANY WARRANTY; without even the implied warranty of
15# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
16# General Public License for more details.
17#
18# You should have received a copy of the GNU General Public License
19# along with yat. If not, see <http://www.gnu.org/licenses/>.
20
21yat_libyat_la_SOURCES += \
22  yat/utility/Aligner.cc \
23  yat/utility/Alignment.cc \
24  yat/utility/BasicMatrix.cc \
25  yat/utility/Cigar.cc \
26  yat/utility/ColumnStream.cc \
27  yat/utility/CommandLine.cc \
28  yat/utility/DataWeight.cc \
29  yat/utility/Deleter.cc \
30  yat/utility/ranking/NodeBase.cc \
31  yat/utility/ranking/Impl.cc \
32  yat/utility/DiagonalMatrix.cc \
33  yat/utility/Exception.cc \
34  yat/utility/FileUtil.cc \
35  yat/utility/GetlineIterator.cc \
36  yat/utility/Index.cc \
37  yat/utility/KernelPCA.cc \
38  yat/utility/kNNI.cc \
39  yat/utility/Matrix.cc \
40  yat/utility/MatrixWeighted.cc \
41  yat/utility/NNI.cc \
42  yat/utility/Option.cc \
43  yat/utility/OptionFile.cc \
44  yat/utility/OptionInFile.cc \
45  yat/utility/OptionOutFile.cc \
46  yat/utility/OptionHelp.cc \
47  yat/utility/OptionSwitch.cc \
48  yat/utility/PCA.cc \
49  yat/utility/split.cc \
50  yat/utility/stl_utility.cc \
51  yat/utility/Scheduler.cc \
52  yat/utility/SmithWaterman.cc \
53  yat/utility/SVD.cc \
54  yat/utility/TypeInfo.cc \
55  yat/utility/utility.cc \
56  yat/utility/Vector.cc \
57  yat/utility/VectorBase.cc \
58  yat/utility/VectorConstView.cc \
59  yat/utility/VectorMutable.cc \
60  yat/utility/VectorView.cc \
61  yat/utility/version.cc \
62  yat/utility/WeNNI.cc
63
64nobase_include_HEADERS += \
65  $(srcdir)/yat/utility/Aligner.h \
66  $(srcdir)/yat/utility/Alignment.h \
67  $(srcdir)/yat/utility/BasicMatrix.h \
68  $(srcdir)/yat/utility/BasicVector.h \
69  $(srcdir)/yat/utility/BasicQueue.h \
70  $(srcdir)/yat/utility/BinaryIstreamIterator.h \
71  $(srcdir)/yat/utility/BinaryOstreamIterator.h \
72  $(srcdir)/yat/utility/BLAS_level1.h \
73  $(srcdir)/yat/utility/BLAS_level2.h \
74  $(srcdir)/yat/utility/BLAS_level3.h \
75  $(srcdir)/yat/utility/BLAS_utility.h \
76  $(srcdir)/yat/utility/boost_exception_ptr.h \
77  $(srcdir)/yat/utility/Cigar.h \
78  $(srcdir)/yat/utility/CigarIterator.h \
79  $(srcdir)/yat/utility/ColumnStream.h \
80  $(srcdir)/yat/utility/CommandLine.h \
81  $(srcdir)/yat/utility/concept_check.h \
82  $(srcdir)/yat/utility/Container2DIterator.h \
83  $(srcdir)/yat/utility/DataIterator.h \
84  $(srcdir)/yat/utility/DataWeight.h \
85  $(srcdir)/yat/utility/DataWeightProxy.h \
86  $(srcdir)/yat/utility/Deleter.h \
87  $(srcdir)/yat/utility/deprecate.h \
88  $(srcdir)/yat/utility/DiagonalMatrix.h \
89  $(srcdir)/yat/utility/Exception.h \
90  $(srcdir)/yat/utility/FileUtil.h \
91  $(srcdir)/yat/utility/GetlineIterator.h \
92  $(srcdir)/yat/utility/getvector.h \
93  $(srcdir)/yat/utility/Index.h \
94  $(srcdir)/yat/utility/iterator_traits.h \
95  $(srcdir)/yat/utility/KernelMatrix.h \
96  $(srcdir)/yat/utility/KernelPCA.h \
97  $(srcdir)/yat/utility/kNNI.h \
98  $(srcdir)/yat/utility/Matrix.h \
99  $(srcdir)/yat/utility/MatrixExpression.h \
100  $(srcdir)/yat/utility/MatrixWeighted.h \
101  $(srcdir)/yat/utility/merge.h \
102  $(srcdir)/yat/utility/MergeIterator.h \
103  $(srcdir)/yat/utility/NNI.h \
104  $(srcdir)/yat/utility/Option.h \
105  $(srcdir)/yat/utility/OptionArg.h \
106  $(srcdir)/yat/utility/OptionFile.h \
107  $(srcdir)/yat/utility/OptionInFile.h \
108  $(srcdir)/yat/utility/OptionOutFile.h \
109  $(srcdir)/yat/utility/OptionHelp.h \
110  $(srcdir)/yat/utility/OptionSwitch.h \
111  $(srcdir)/yat/utility/OstreamIterator.h \
112  $(srcdir)/yat/utility/PCA.h \
113  $(srcdir)/yat/utility/PriorityQueue.h \
114  $(srcdir)/yat/utility/Queue.h \
115  $(srcdir)/yat/utility/ranking/Impl.h \
116  $(srcdir)/yat/utility/ranking/Iterator.h \
117  $(srcdir)/yat/utility/ranking/NodeBase.h \
118  $(srcdir)/yat/utility/ranking/NodeValue.h \
119  $(srcdir)/yat/utility/Scheduler.h \
120  $(srcdir)/yat/utility/Segment.h \
121  $(srcdir)/yat/utility/SegmentMap.h \
122  $(srcdir)/yat/utility/SegmentSet.h \
123  $(srcdir)/yat/utility/SegmentTree.h \
124  $(srcdir)/yat/utility/SmartPtr.h \
125  $(srcdir)/yat/utility/SmithWaterman.h \
126  $(srcdir)/yat/utility/sort_index.h \
127  $(srcdir)/yat/utility/split.h \
128  $(srcdir)/yat/utility/StreamRedirect.h \
129  $(srcdir)/yat/utility/Range.h \
130  $(srcdir)/yat/utility/Ranking.h \
131  $(srcdir)/yat/utility/stl_utility.h \
132  $(srcdir)/yat/utility/StrideIterator.h \
133  $(srcdir)/yat/utility/SVD.h \
134  $(srcdir)/yat/utility/TypeInfo.h \
135  $(srcdir)/yat/utility/utility.h \
136  $(srcdir)/yat/utility/Vector.h \
137  $(srcdir)/yat/utility/VectorBase.h \
138  $(srcdir)/yat/utility/VectorConstView.h \
139  $(srcdir)/yat/utility/VectorExpression.h \
140  $(srcdir)/yat/utility/VectorMutable.h \
141  $(srcdir)/yat/utility/VectorView.h \
142  $(srcdir)/yat/utility/version.h \
143  $(srcdir)/yat/utility/WeightedIteratorArchetype.h \
144  $(srcdir)/yat/utility/WeightedIterator.h \
145  $(srcdir)/yat/utility/WeightIterator.h \
146  $(srcdir)/yat/utility/WeNNI.h \
147  $(srcdir)/yat/utility/yat_assert.h
148
149nobase_nodist_include_HEADERS = yat/utility/config_public.h
150
151include yat/utility/expression/Makefile.am
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