| 1 | ## Process this file with automake to produce Makefile.in |
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| 2 | ## |
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| 3 | |
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| 4 | # $Id: Makefile.am 3219 2014-05-06 03:28:46Z peter $ |
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| 5 | # |
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| 6 | # Copyright (C) 2003 Daniel Dalevi, Jari Häkkinen |
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| 7 | # Copyright (C) 2005 Peter Johansson |
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| 8 | # Copyright (C) 2006 Jari Häkkinen |
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| 9 | # Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson |
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| 10 | # Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014 Peter Johansson |
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| 11 | # |
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| 12 | # This file is part of the yat library, http://dev.thep.lu.se/yat |
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| 13 | # |
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| 14 | # The yat library is free software; you can redistribute it and/or |
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| 15 | # modify it under the terms of the GNU General Public License as |
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| 16 | # published by the Free Software Foundation; either version 3 of the |
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| 17 | # License, or (at your option) any later version. |
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| 18 | # |
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| 19 | # The yat library is distributed in the hope that it will be useful, |
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| 20 | # but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 21 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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| 22 | # General Public License for more details. |
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| 23 | # |
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| 24 | # You should have received a copy of the GNU General Public License |
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| 25 | # along with yat. If not, see <http://www.gnu.org/licenses/>. |
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| 26 | |
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| 27 | # -I arg should be the same as arg in AC_CONFIG_MACRO_DIR in configure.ac |
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| 28 | ACLOCAL_AMFLAGS = -I m4 |
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| 29 | |
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| 30 | CLEANFILES = |
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| 31 | DOXYGEN_INPUT = |
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| 32 | EXTRA_DIST = |
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| 33 | MOSTLYCLEANFILES = |
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| 34 | ## append targets to this variable for tests included in 'make installcheck' |
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| 35 | INSTALL_CHECK_TARGETS = |
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| 36 | |
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| 37 | FORCE: |
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| 38 | |
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| 39 | ## variable to used to switch between verbose output and silence |
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| 40 | ## yat_dev_null expands to empty string in verbose mode and to > |
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| 41 | ## /dev/null in silent mode, so 'echo hello $(yat_dev_null)' will |
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| 42 | ## display hello in verbose mode and being silent in silent mode. |
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| 43 | yat_dev_null = $(yat_dev_null_$(V)) |
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| 44 | yat_dev_null_ = $(yat_dev_null_$(AM_DEFAULT_VERBOSITY)) |
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| 45 | yat_dev_null_0 = > /dev/null |
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| 46 | |
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| 47 | include build_support/Makefile.am |
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| 48 | ## yat/Makefile.am contains DOXYGEN definitions, so needs to be |
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| 49 | ## included before doc/Makefile |
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| 50 | include yat/Makefile.am |
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| 51 | include doc/Makefile.am |
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| 52 | include m4/Makefile.am |
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| 53 | include test/Makefile.am |
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| 54 | |
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| 55 | EXTRA_DIST += doc/Makefile |
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| 56 | EXTRA_DIST += test/Makefile |
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| 57 | EXTRA_DIST += yat/random/Makefile |
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| 58 | EXTRA_DIST += yat/regression/Makefile |
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| 59 | EXTRA_DIST += yat/normalizer/Makefile |
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| 60 | EXTRA_DIST += yat/classifier/Makefile |
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| 61 | EXTRA_DIST += yat/omic/Makefile |
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| 62 | EXTRA_DIST += yat/statistics/Makefile |
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| 63 | EXTRA_DIST += yat/utility/Makefile |
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| 64 | EXTRA_DIST += yat/Makefile |
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| 65 | |
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| 66 | clean-local: |
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| 67 | rm -rf doc/$(DX_HTML_OUTPUT) test/yathello test/testSubDir test/lib |
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| 68 | |
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| 69 | installcheck-local: $(INSTALL_CHECK_TARGETS) |
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| 70 | |
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| 71 | .PHONY: doc maintainer-check news-check svn-check svn-clean release |
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| 72 | |
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| 73 | # like the normal install target, but does not update header files |
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| 74 | # (and their time stamps) if the content did not change. |
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| 75 | install-modified: |
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| 76 | $(MAKE) install $(AM_MAKEFLAGS) INSTALL_HEADER="$(install_sh_DATA) -C" |
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| 77 | |
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| 78 | ############################################################### |
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| 79 | ## |
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| 80 | ## Some targets useful for the maintainer |
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| 81 | ## |
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| 82 | MAINTAINER_CHECK_LOCAL = maintainer-check-local |
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| 83 | RELEASE_LOCAL = ltversion-check |
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| 84 | |
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| 85 | .PHONY: maintainer-check-local ltversion-check |
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| 86 | |
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| 87 | ltversion-check: |
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| 88 | @case `sed 200q $(srcdir)/m4/version.m4` in \ |
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| 89 | *yat-$(VERSION)*$(YAT_LT_VERSION)*);; \ |
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| 90 | *) \ |
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| 91 | echo "version.m4: YAT_LT_VERSION not updated;" 1>&2;\ |
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| 92 | echo " expected to find 'yat-$(VERSION) $(YAT_LT_VERSION)'" 1>&2;\ |
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| 93 | exit 1;; \ |
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| 94 | esac |
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| 95 | |
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| 96 | maintainer-check-local: |
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| 97 | $(MAKE) $(AM_MAKEFLAGS) syntax-check |
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| 98 | $(MAKE) $(AM_MAKEFLAGS) mc_installcheck |
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| 99 | $(MAKE) $(AM_MAKEFLAGS) mc_without_samtools |
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| 100 | $(MAKE) $(AM_MAKEFLAGS) yat-pc-check |
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| 101 | |
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| 102 | mc_installcheck: |
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| 103 | mkdir _inst |
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| 104 | @mcl_install=`cd _inst && pwd` \ |
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| 105 | && $(MAKE) $(AM_MAKEFLAGS) clean \ |
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| 106 | && $(MAKE) $(AM_MAKEFLAGS) prefix=$$mcl_install \ |
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| 107 | && $(MAKE) $(AM_MAKEFLAGS) prefix=$$mcl_install doc \ |
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| 108 | && $(MAKE) $(AM_MAKEFLAGS) prefix=$$mcl_install install \ |
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| 109 | && $(MAKE) $(AM_MAKEFLAGS) prefix=$$mcl_install installcheck |
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| 110 | |
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| 111 | # check that yat.pc is correctly generated with different combinations |
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| 112 | # of ./configure; make. This target is typically used within |
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| 113 | # mainatiner-check; if used outside maintainer-check, please note that |
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| 114 | # the target calls configure possibly with other arguments, so it's |
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| 115 | # probably a good a idea to re-configure afterwards. |
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| 116 | yat-pc-check: |
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| 117 | $(SHELL) $(srcdir)/configure $(DISTCHECK_CONFIGURE_FLAGS) \ |
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| 118 | && rm -f build_support/yat.pc && $(MAKE) $(AM_MAKEFLAGS) \ |
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| 119 | && $(GREP) '^prefix=/usr/local' build_support/yat.pc \ |
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| 120 | && $(GREP) '^exec_prefix=$${prefix}' build_support/yat.pc \ |
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| 121 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 122 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 123 | && rm -f build_support/yat.pc && $(MAKE) $(AM_MAKEFLAGS) prefix=foo \ |
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| 124 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 125 | && $(GREP) '^exec_prefix=$${prefix}' build_support/yat.pc \ |
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| 126 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 127 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 128 | && rm -f build_support/yat.pc \ |
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| 129 | && $(MAKE) $(AM_MAKEFLAGS) prefix=foo exec_prefix=bar \ |
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| 130 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 131 | && $(GREP) '^exec_prefix=bar' build_support/yat.pc \ |
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| 132 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 133 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 134 | && rm -f build_support/yat.pc \ |
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| 135 | && $(MAKE) $(AM_MAKEFLAGS) prefix=foo exec_prefix=bar libdir=baz includedir=quz \ |
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| 136 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 137 | && $(GREP) '^exec_prefix=bar' build_support/yat.pc \ |
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| 138 | && $(GREP) '^libdir=baz' build_support/yat.pc \ |
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| 139 | && $(GREP) '^includedir=quz' build_support/yat.pc \ |
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| 140 | && $(SHELL) $(srcdir)/configure $(DISTCHECK_CONFIGURE_FLAGS) exec_prefix=/t \ |
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| 141 | && rm -f build_support/yat.pc && $(MAKE) $(AM_MAKEFLAGS) \ |
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| 142 | && $(GREP) '^prefix=/usr/local' build_support/yat.pc \ |
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| 143 | && $(GREP) '^exec_prefix=/t' build_support/yat.pc \ |
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| 144 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 145 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 146 | && rm -f build_support/yat.pc && $(MAKE) $(AM_MAKEFLAGS) prefix=foo \ |
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| 147 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 148 | && $(GREP) '^exec_prefix=/t' build_support/yat.pc \ |
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| 149 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 150 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 151 | && rm -f build_support/yat.pc \ |
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| 152 | && $(MAKE) $(AM_MAKEFLAGS) prefix=foo exec_prefix=bar \ |
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| 153 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 154 | && $(GREP) '^exec_prefix=bar' build_support/yat.pc \ |
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| 155 | && $(GREP) '^libdir=$${exec_prefix}/lib' build_support/yat.pc \ |
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| 156 | && $(GREP) '^includedir=$${prefix}/include' build_support/yat.pc \ |
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| 157 | && rm -f build_support/yat.pc \ |
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| 158 | && $(MAKE) $(AM_MAKEFLAGS) prefix=foo exec_prefix=bar libdir=baz includedir=quz \ |
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| 159 | && $(GREP) '^prefix=foo' build_support/yat.pc \ |
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| 160 | && $(GREP) '^exec_prefix=bar' build_support/yat.pc \ |
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| 161 | && $(GREP) '^libdir=baz' build_support/yat.pc \ |
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| 162 | && $(GREP) '^includedir=quz' build_support/yat.pc |
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| 163 | |
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| 164 | SVN = svn |
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| 165 | SVNCOPYRIGHT = svncopyright |
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| 166 | SVNDIGEST_COPY_CACHE = svndigest-copy-cache |
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| 167 | SCP = scp |
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| 168 | |
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| 169 | copyright: |
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| 170 | $(SVNCOPYRIGHT) -v -r $(srcdir) |
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| 171 | |
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| 172 | ## FIXME perhaps incorporate this target into release |
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| 173 | release-tag-upload: |
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| 174 | $(MAKE) $(AM_MAKEFLAGS) release |
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| 175 | $(MAKE) $(AM_MAKEFLAGS) svn-tag |
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| 176 | $(MAKE) $(AM_MAKEFLAGS) announce.txt |
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| 177 | $(MAKE) $(AM_MAKEFLAGS) upload |
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| 178 | |
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| 179 | announce.txt: build_support/gen_announce.sh $(distdir).tar.gz.MD5 |
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| 180 | $(SHELL) build_support/gen_announce.sh > $@ |
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| 181 | |
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| 182 | sf_user = peter31042 |
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| 183 | |
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| 184 | upload: $(distdir).tar.gz $(distdir).tar.gz.MD5 |
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| 185 | $(SCP) $(distdir).tar.gz $(distdir).tar.gz.MD5 \ |
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| 186 | $(sf_user),libyat@frs.sourceforge.net:/home/frs/project/l/li/libyat/. |
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| 187 | |
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| 188 | STABLE_VERSION = $(YAT_MAJOR_VERSION).$(YAT_MINOR_VERSION) |
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| 189 | STABLE_BRANCH = ^/branches/$(STABLE_VERSION)-stable |
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| 190 | |
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| 191 | # create a tag from current stable branch; depends on check-version to |
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| 192 | # ensure that version is macro.minor.micro (no pre suffix), that wc is |
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| 193 | # pristine and updated. |
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| 194 | svn-tag: check-version check-svn-diff |
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| 195 | cd $(srcdir) && \ |
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| 196 | $(SVN) copy $(STABLE_BRANCH) ^/tags/$(VERSION) \ |
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| 197 | -m "tagging version $(VERSION)" |
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| 198 | |
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| 199 | # create a stable-branch from trunk |
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| 200 | svn-stable-branch: check-svn-diff all |
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| 201 | cd $(srcdir) && \ |
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| 202 | svn copy ^/trunk $(STABLE_BRANCH) \ |
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| 203 | -m "New stable branch $(STABLE_VERSION)" \ |
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| 204 | && svn co $(STABLE_BRANCH) ../yat-$(STABLE_VERSION).x \ |
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| 205 | && $(SVNDIGEST_COPY_CACHE) -v -r . -t ../yat-$(STABLE_VERSION).x |
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| 206 | |
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| 207 | include $(srcdir)/am/maintainer.am |
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| 208 | |
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| 209 | # run within maintainer-check |
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| 210 | # try ./configure --without-samtools; make; make check |
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| 211 | mc_without_samtools: |
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| 212 | @rm -rf _mc_without_samtools |
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| 213 | mkdir _mc_without_samtools |
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| 214 | cd _mc_without_samtools \ |
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| 215 | && ../$(srcdir)/configure $(DISTCHECK_CONFIGURE_FLAGS) --without-samtools \ |
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| 216 | && $(MAKE) $(AM_MAKEFLAGS) && $(MAKE) check $(AM_MAKEFLAGS) |
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| 217 | |
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| 218 | test_sources = $(EXTRA_PROGRAMS:.test=.cc) |
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| 219 | |
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| 220 | syntax-check: sc_config_h |
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| 221 | |
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| 222 | sc_config_h: |
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| 223 | @for f in $(yat_libyat_la_SOURCES) $(test_sources); do \ |
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| 224 | test -e $$f || f=$(srcdir)/$$f;\ |
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| 225 | grep '^#include' $$f | head -n 1 | grep '<config.h>' > /dev/null || \ |
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| 226 | { echo "missing '#include <config.h>' in $$f" >&2; exit 1; } \ |
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| 227 | done |
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