source: trunk/test

Name Size Rev Age Author Last Change
../
data 3987   9 months Peter merge release 0.17.2 into trunk
yat-hello 3330   7 years Peter update copyright years
alignment2.cc 2.8 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   7 years Peter update copyright years
bam.cc 12.3 KB 3999   7 months Peter update copyright years
bam_header2.cc 1.7 KB 3999   7 months Peter update copyright years
bam_header.cc 5.2 KB 3999   7 months Peter update copyright years
bam_iterator.cc 3.7 KB 3999   7 months Peter update copyright years
bam_pair.cc 1.7 KB 3883   14 months Peter remove support for building against libbam (which allows us to remove …
bam_pair_analyse.cc 1.7 KB 3999   7 months Peter update copyright years
bam_pair_buffer.cc 2.7 KB 4057   6 weeks Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
bam_pair_iterator2.cc 2.2 KB 3883   14 months Peter remove support for building against libbam (which allows us to remove …
bam_pair_iterator.cc 2.5 KB 3999   7 months Peter update copyright years
bam_read_filter.cc 1.7 KB 3999   7 months Peter update copyright years
bam_region_iterator.cc 2.6 KB 3999   7 months Peter update copyright years
binary_read_write.cc 2.6 KB 3910   12 months Peter add missing file
chi2.cc 1.9 KB 3726   3 years Peter correct include
cigar2.cc 1.7 KB 3342   7 years Peter merge 0.12.2 into trunk
cigar.cc 4.3 KB 4003   7 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
cigar_iterator.cc 2.8 KB 3417   6 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   8 years Peter update copyright years
codon.cc 1.8 KB 3330   7 years Peter update copyright years
commandline.cc 18.2 KB 2893   8 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   8 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   8 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   5 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   8 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   8 years Peter update copyright years
data_weight.cc 1.6 KB 2919   8 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   7 years Peter update copyright years
defs.sh.in 4.9 KB 3999   7 months Peter update copyright years
deleter.cc 1.2 KB 4022   4 months Peter prefer std::shared_ptr over boost
diagonal_matrix.cc 3.5 KB 3660   4 years Peter missing include
distance.cc 9.0 KB 3550   4 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   4 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.6 KB 3943   10 months Peter merge r3941 into trunk
ensemble.cc 5.7 KB 2919   8 years Peter update copyright years
fasta.cc 2.6 KB 3999   7 months Peter update copyright years
feature_selection.cc 3.4 KB 2919   8 years Peter update copyright years
fileutil.cc 6.6 KB 3966   9 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
fisher.cc 6.4 KB 3743   3 years Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   4 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3999   7 months Peter update copyright years
gen_libmy_static.sh 1.5 KB 3130   7 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   8 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   8 years Peter update copyright years
getvector.cc 2.5 KB 3930   10 months Peter merge release 0.17.1 into trunk
gff.cc 4.7 KB 3875   14 months Peter merge release 0.17 into trunk
gsl_error_handler.cc 1.4 KB 3963   9 months Peter new function supposed to be used by GSL error handler, resulting in a …
help.cc 1.2 KB 2919   8 years Peter update copyright years
help_test.sh 1.3 KB 3114   8 years Peter update copyright years
histogram.cc 2.2 KB 2919   8 years Peter update copyright years
igp.cc 1.4 KB 2919   8 years Peter update copyright years
index.cc 2.7 KB 2919   8 years Peter update copyright years
init.sh 2.5 KB 3036   8 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   8 years Peter update copyright years
interpolation.cc 3.8 KB 3966   9 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
iterator.cc 22.6 KB 3534   4 years Peter move test::weighted_iterator_archetype to …
kendall.cc 4.8 KB 3987   9 months Peter merge release 0.17.2 into trunk
kernel.cc 7.3 KB 2919   8 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   8 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   7 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   8 years Peter update copyright years
knn.cc 11.2 KB 2919   8 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   8 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   8 years Peter update copyright years
libbam.cc 1.4 KB 3888   14 months Peter fix compilation errors in --with-htslib mode introduced in r3883, refs #939
likelihood_ratio_test_binomial.cc 1.4 KB 3138   7 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   9 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 13.7 KB 4059   3 weeks Peter new function: round, which is rounding elements in a range with the …
matrix.cc 7.7 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 4.2 KB 3999   7 months Peter update copyright years
matrix_lookup.cc 6.3 KB 2919   8 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   8 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   8 years Peter update copyright years
merge.cc 3.3 KB 2919   8 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   6 years Peter updating copyright statements
multiprocess.cc 2.2 KB 4044   2 months Peter new function multiprocess; closes #958
nbc.cc 1.8 KB 2919   8 years Peter update copyright years
ncc.cc 11.4 KB 2919   8 years Peter update copyright years
negative_binomial.cc 5.1 KB 3999   7 months Peter update copyright years
nni.cc 5.9 KB 2919   8 years Peter update copyright years
normalization.cc 21.2 KB 3999   7 months Peter update copyright years
ostream_iterator.cc 1.6 KB 3152   7 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   8 years Peter update copyright years
percentile_confidence_interval.cc 2.9 KB 4036   4 months Peter closes #963. New class PercentileConfidenceInterval?
perceptron.cc 5.3 KB 3709   4 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.8 KB 3999   7 months Peter update copyright years
poisson.cc 4.1 KB 3662   4 years Peter close #882
print_what.cc 1.7 KB 3938   10 months Peter let configure fail if compiler is not a C++11 compiler. …
priority_queue.cc 2.4 KB 3999   7 months Peter update copyright years
queue2.cc 1.9 KB 3999   7 months Peter update copyright years
queue3.cc 2.6 KB 4043   2 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
queue.cc 1.7 KB 3999   7 months Peter update copyright years
range.cc 1.5 KB 3330   7 years Peter update copyright years
README 4.6 KB 2754   9 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.3 KB 3855   17 months Peter updating copyright statements
rnd.cc 2.4 KB 4009   7 months Peter closes #965; Default constructor for DiscreteGeneral?
rng-mt.cc 3.6 KB 3999   7 months Peter update copyright years
roc.cc 11.8 KB 3439   5 years Peter merge release 0.13 into trunk
round.cc 1.8 KB 4059   3 weeks Peter new function: round, which is rounding elements in a range with the …
scheduler2.cc 2.6 KB 3855   17 months Peter updating copyright statements
scheduler3.cc 2.1 KB 3855   17 months Peter updating copyright statements
scheduler4.cc 1.9 KB 3686   4 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   22 months Peter Merge release 0.16 into trunk
scheduler6.cc 2.0 KB 3828   22 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
scheduler7.cc 2.3 KB 3848   20 months Peter add functionality to alter number of threads used by Scheduler. closes #910
scheduler.cc 2.5 KB 3851   17 months Peter merge release 0.16.3 into trunk.
score.cc 3.9 KB 2919   8 years Peter update copyright years
segment.cc 14.6 KB 4032   4 months Peter merge release 0.18.1 into trunk
smart_ptr.cc 1.3 KB 2919   8 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   7 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   4 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   8 years Peter update copyright years
split.cc 2.4 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 13.4 KB 4053   7 weeks Peter add some test for correlation(Matrix); speed up, particuarly when …
stream_redirect.cc 3.7 KB 2919   8 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   8 years Peter update copyright years
Suite.cc 4.7 KB 4058   3 weeks Peter a not-so-random number generator that can be used to fill containers …
Suite.h 21.9 KB 4058   3 weeks Peter a not-so-random number generator that can be used to fill containers …
svd.cc 3.6 KB 2919   8 years Peter update copyright years
svm.cc 4.6 KB 2919   8 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   8 years Peter update copyright years
target.cc 3.4 KB 2919   8 years Peter update copyright years
ttest.cc 1.7 KB 3114   8 years Peter update copyright years
tukey.cc 2.7 KB 3875   14 months Peter merge release 0.17 into trunk
utility.cc 22.9 KB 3855   17 months Peter updating copyright statements
vcf.cc 5.4 KB 4021   6 months Peter closes #961. Improve message in thrown exceptions.
vcf_compare.cc 1004 bytes 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   3 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file3.cc 1.1 KB 4045   2 months Peter add missing file
vcf_file.cc 2.1 KB 3774   3 years Peter implement VcfIterator?. refs #905
vcf_header.cc 2.3 KB 3999   7 months Peter update copyright years
vector.cc 13.9 KB 3987   9 months Peter merge release 0.17.2 into trunk
vector_expression.cc 6.1 KB 3677   4 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   8 years Peter update copyright years
view.cc 4.3 KB 3661   4 years Peter update copyright years
weighted_iterator_archetype.cc 5.4 KB 3579   4 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   8 years Peter update copyright years
yat_config_test.sh 1.7 KB 3855   17 months Peter updating copyright statements
yat_cpp_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   8 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3999   7 months Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3855   17 months Peter updating copyright statements
yat_ld_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 2.0 KB 3855   17 months Peter updating copyright statements
yat_lt_link_ifelse_test.sh 2.4 KB 3855   17 months Peter updating copyright statements
yat_lt_link_la_ifelse_test.sh 1.5 KB 3855   17 months Peter updating copyright statements
yat_m4_test2.sh 1.5 KB 3999   7 months Peter update copyright years
yat_m4_test.sh 1.7 KB 3855   17 months Peter updating copyright statements
yat_m4_with_bam_test.sh 1.4 KB 3855   17 months Peter updating copyright statements
yat_msg_error_test2.sh 1.2 KB 3330   7 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3855   17 months Peter updating copyright statements
yat_pc_test.sh 3.2 KB 4019   6 months Peter merge 0.18 into trunk
yat_prog_move_if_change_test.sh 1.2 KB 3114   8 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3855   17 months Peter updating copyright statements
yat_svn_release_year_test.sh 1.8 KB 3999   7 months Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3999   7 months Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   7 years Peter update copyright years
  • Property svn:ignore set to
    .deps
    Makefile.in
    Makefile
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