source: trunk/test

Name Size Rev Age Author Last Change
../
data 4114   7 months Peter new class for one-way ANOVA test
yat-hello 4089   9 months Peter updating copyright years
alignment2.cc 2.8 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
anova.cc 1.8 KB 4114   7 months Peter new class for one-way ANOVA test
averager1.cc 1.2 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   8 years Peter update copyright years
bam.cc 12.3 KB 3999   20 months Peter update copyright years
bam_header2.cc 1.7 KB 3999   20 months Peter update copyright years
bam_header.cc 5.2 KB 3999   20 months Peter update copyright years
bam_iterator.cc 3.7 KB 3999   20 months Peter update copyright years
bam_pair.cc 1.7 KB 3883   2 years Peter remove support for building against libbam (which allows us to remove …
bam_pair_analyse.cc 1.7 KB 3999   20 months Peter update copyright years
bam_pair_buffer.cc 2.7 KB 4057   14 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
bam_pair_iterator2.cc 2.2 KB 3883   2 years Peter remove support for building against libbam (which allows us to remove …
bam_pair_iterator.cc 2.5 KB 3999   20 months Peter update copyright years
bam_read_filter.cc 1.7 KB 3999   20 months Peter update copyright years
bam_region_iterator.cc 2.6 KB 3999   20 months Peter update copyright years
binary_read_write.cc 2.6 KB 3910   2 years Peter add missing file
chi2.cc 1.9 KB 3726   4 years Peter correct include
cigar2.cc 1.7 KB 3342   8 years Peter merge 0.12.2 into trunk
cigar.cc 4.3 KB 4127   4 months Peter add needed include
cigar_iterator.cc 2.8 KB 3417   7 years Peter updating copyright statements
cmd_test.sh 975 bytes 4153   3 months Peter New class OptionVersion?. closes #824.
codon.cc 1.8 KB 3330   8 years Peter update copyright years
commandline.cc 18.2 KB 2893   9 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   9 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   9 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   6 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   9 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   9 years Peter update copyright years
data_weight.cc 1.6 KB 2919   9 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   8 years Peter update copyright years
defs.sh.in 4.9 KB 3999   20 months Peter update copyright years
deleter.cc 1.2 KB 4089   9 months Peter updating copyright years
diagonal_matrix.cc 4.0 KB 4105   8 months Peter implement +=, -=, and *= operators for DiagonalMatrix?; prefer using …
distance.cc 9.0 KB 3550   5 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   5 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.7 KB 4062   12 months Peter merged r4061 into trunk
ensemble.cc 5.7 KB 2919   9 years Peter update copyright years
fasta.cc 2.6 KB 3999   20 months Peter update copyright years
feature_selection.cc 3.4 KB 2919   9 years Peter update copyright years
fileutil.cc 6.6 KB 3966   22 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
fisher.cc 6.4 KB 3743   4 years Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   5 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3999   20 months Peter update copyright years
gen_libmy_static.sh 1.5 KB 3130   9 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   9 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   9 years Peter update copyright years
getvector.cc 2.5 KB 3930   23 months Peter merge release 0.17.1 into trunk
gff.cc 4.7 KB 3875   2 years Peter merge release 0.17 into trunk
gsl_error_handler.cc 1.4 KB 3963   22 months Peter new function supposed to be used by GSL error handler, resulting in a …
help_test.sh 1.2 KB 4153   3 months Peter New class OptionVersion?. closes #824.
histogram.cc 2.2 KB 2919   9 years Peter update copyright years
igp.cc 1.4 KB 2919   9 years Peter update copyright years
index.cc 2.7 KB 2919   9 years Peter update copyright years
init.sh 2.5 KB 3036   9 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   9 years Peter update copyright years
interpolation.cc 3.8 KB 3966   22 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
iterator.cc 23.1 KB 4136   4 months Peter closes #975 and refs #202; use Container2DIterator as …
kendall.cc 5.6 KB 4110   8 months Peter merge release 0.19 into trunk
kernel.cc 7.3 KB 2919   9 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   9 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   8 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   9 years Peter update copyright years
knn.cc 11.2 KB 2919   9 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   9 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   9 years Peter update copyright years
libbam.cc 1.4 KB 3888   2 years Peter fix compilation errors in --with-htslib mode introduced in r3883, refs #939
likelihood_ratio_test_binomial.cc 1.4 KB 3138   8 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   10 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 14.1 KB 4172   11 days Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
matrix.cc 10.1 KB 4132   4 months Peter fixes #976 concept for Container2D now works with abstract class
matrix_expression.cc 4.6 KB 4139   4 months Peter the same bug reported in ticket #897 for vectors is also the case for …
matrix_lookup.cc 6.3 KB 2919   9 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   9 years Peter update copyright years
matrix_view.cc 7.5 KB 4141   4 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
matrix_weighted.cc 3.1 KB 2919   9 years Peter update copyright years
merge.cc 3.3 KB 2919   9 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   7 years Peter updating copyright statements
multiminimizer.cc 1.8 KB 4172   11 days Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
multiprocess.cc 2.2 KB 4044   15 months Peter new function multiprocess; closes #958
multivariate.cc 2.3 KB 4130   4 months Peter Add function fit2 taking new class MatrixBase?. Keep the old interface …
nbc.cc 1.8 KB 2919   9 years Peter update copyright years
ncc.cc 11.4 KB 2919   9 years Peter update copyright years
negative_binomial.cc 5.1 KB 3999   20 months Peter update copyright years
nni.cc 5.9 KB 2919   9 years Peter update copyright years
normalization.cc 21.2 KB 3999   20 months Peter update copyright years
ostream_iterator.cc 1.6 KB 3152   8 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   9 years Peter update copyright years
percentile_confidence_interval.cc 2.9 KB 4036   16 months Peter closes #963. New class PercentileConfidenceInterval?
perceptron.cc 5.3 KB 3709   5 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   8 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.8 KB 3999   20 months Peter update copyright years
poisson.cc 4.1 KB 3662   5 years Peter close #882
print_what.cc 1.7 KB 3938   23 months Peter let configure fail if compiler is not a C++11 compiler. …
priority_queue.cc 2.4 KB 3999   20 months Peter update copyright years
queue2.cc 1.9 KB 3999   20 months Peter update copyright years
queue3.cc 2.6 KB 4043   15 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
queue.cc 1.7 KB 3999   20 months Peter update copyright years
range.cc 1.5 KB 3330   8 years Peter update copyright years
ranking.cc 8.5 KB 4083   9 months Peter merge kendall-score branch into trunk. refs #710
README 4.6 KB 2754   10 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.3 KB 3855   2 years Peter updating copyright statements
rnd.cc 2.4 KB 4147   3 months Peter add class for random number generator from negative binomial distribution.
rng-mt.cc 3.6 KB 3999   20 months Peter update copyright years
roc.cc 11.8 KB 3439   7 years Peter merge release 0.13 into trunk
round.cc 1.8 KB 4059   13 months Peter new function: round, which is rounding elements in a range with the …
scheduler2.cc 2.6 KB 3855   2 years Peter updating copyright statements
scheduler3.cc 2.1 KB 3855   2 years Peter updating copyright statements
scheduler4.cc 1.9 KB 3686   5 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   3 years Peter Merge release 0.16 into trunk
scheduler6.cc 2.0 KB 3828   3 years Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
scheduler7.cc 2.3 KB 3848   3 years Peter add functionality to alter number of threads used by Scheduler. closes #910
scheduler8.cc 2.5 KB 4164   2 months Peter Merge release 0.19.1 into trunk
scheduler9.cc 2.2 KB 4164   2 months Peter Merge release 0.19.1 into trunk
scheduler.cc 2.5 KB 3851   2 years Peter merge release 0.16.3 into trunk.
score.cc 3.9 KB 2919   9 years Peter update copyright years
segment.cc 14.6 KB 4032   16 months Peter merge release 0.18.1 into trunk
smart_ptr.cc 1.3 KB 2919   9 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   8 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   5 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   9 years Peter update copyright years
split.cc 2.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 13.4 KB 4089   9 months Peter updating copyright years
stdopt.cc 1.3 KB 4153   3 months Peter New class OptionVersion?. closes #824.
stream_redirect.cc 3.7 KB 2919   9 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   9 years Peter update copyright years
Suite.cc 4.7 KB 4089   9 months Peter updating copyright years
Suite.h 21.9 KB 4089   9 months Peter updating copyright years
svd.cc 3.6 KB 2919   9 years Peter update copyright years
svm.cc 4.6 KB 2919   9 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   9 years Peter update copyright years
target.cc 3.4 KB 2919   9 years Peter update copyright years
ttest.cc 1.7 KB 3114   9 years Peter update copyright years
tukey.cc 2.7 KB 3875   2 years Peter merge release 0.17 into trunk
unity_scaler.cc 947 bytes 4164   2 months Peter Merge release 0.19.1 into trunk
utility.cc 24.4 KB 4102   8 months Peter add wrapper function that calls std::string::contains, ::starts_with, …
vcf.cc 6.6 KB 4170   2 weeks Peter New function VCF::Data::set(2)
vcf_compare.cc 1004 bytes 3759   4 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   4 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file3.cc 1.1 KB 4045   15 months Peter add missing file
vcf_file.cc 2.1 KB 3774   4 years Peter implement VcfIterator?. refs #905
vcf_header.cc 2.3 KB 3999   20 months Peter update copyright years
vector.cc 13.9 KB 3987   21 months Peter merge release 0.17.2 into trunk
vector_expression.cc 6.1 KB 3677   5 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   9 years Peter update copyright years
version_option_test.sh 1.3 KB 4153   3 months Peter New class OptionVersion?. closes #824.
view.cc 5.6 KB 4141   4 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
weighted_iterator_archetype.cc 5.4 KB 3579   5 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   9 years Peter update copyright years
yat_config_test.sh 1.7 KB 3855   2 years Peter updating copyright statements
yat_cpp_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   9 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3999   20 months Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3855   2 years Peter updating copyright statements
yat_ld_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 2.0 KB 3855   2 years Peter updating copyright statements
yat_lt_link_ifelse_test.sh 2.4 KB 3855   2 years Peter updating copyright statements
yat_lt_link_la_ifelse_test.sh 1.5 KB 3855   2 years Peter updating copyright statements
yat_m4_test2.sh 1.5 KB 3999   20 months Peter update copyright years
yat_m4_test.sh 1.7 KB 3855   2 years Peter updating copyright statements
yat_m4_with_bam_test.sh 1.4 KB 3855   2 years Peter updating copyright statements
yat_msg_error_test2.sh 1.2 KB 3330   8 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3855   2 years Peter updating copyright statements
yat_pc_test.sh 3.2 KB 4019   19 months Peter merge 0.18 into trunk
yat_prog_move_if_change_test.sh 1.2 KB 3114   9 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3855   2 years Peter updating copyright statements
yat_svn_release_year_test.sh 1.8 KB 3999   20 months Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3999   20 months Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   8 years Peter update copyright years
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