source: trunk/test/Makefile.am @ 2510

Last change on this file since 2510 was 2510, checked in by Peter, 10 years ago

added TukeyBiweightEstimator?. closes #666

  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 6.6 KB
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1## Process this file with automake to produce Makefile.in
2##
3## $Id: Makefile.am 2510 2011-07-08 23:41:43Z peter $
4
5# Copyright (C) 2003 Daniel Dalevi, Jari Häkkinen
6# Copyright (C) 2004 Jari Häkkinen, Peter Johansson, Cecilia Ritz
7# Copyright (C) 2005 Jari Häkkinen, Peter Johansson
8# Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson, Markus Ringnér
9# Copyright (C) 2009, 2010, 2011 Peter Johansson
10#
11# This file is part of the yat library, http://dev.thep.lu.se/yat
12#
13# The yat library is free software; you can redistribute it
14# and/or modify it under the terms of the GNU General Public License as
15# published by the Free Software Foundation; either version 3 of the
16# License, or (at your option) any later version.
17#
18# The yat library is distributed in the hope that it will be useful,
19# but WITHOUT ANY WARRANTY; without even the implied warranty of
20# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
21# General Public License for more details.
22#
23# You should have received a copy of the GNU General Public License
24# along with yat. If not, see <http://www.gnu.org/licenses/>.
25
26## we use suffix .cc for all source
27AM_DEFAULT_SOURCE_EXT = .cc
28
29noinst_HEADERS = Suite.h
30
31check_LTLIBRARIES = libyattest.la
32
33check_SCRIPTS = common_defs.sh
34
35.PHONY: FORCE
36
37clean-local:; rm -rf yathello testSubDir
38
39FORCE:
40
41EXTRA_PROGRAMS = alignment.test averager.test \
42  codon.test commandline.test \
43  concept.test \
44  consensus_inputranker.test data_lookup_1d.test  \
45  data_weight.test data_weight_proxy.test distance.test \
46  dna.test ensemble.test feature_selection.test fileutil.test \
47  fisher.test genomic_position.test getline_iterator.test \
48  gff.test help.test histogram.test \
49  igp.test index.test inputranker.test interpolation.test \
50  iterator.test kernel_lookup.test kernel_pca.test kernel.test \
51  knn.test kolmogorov_smirnov.test large_file.test matrix_lookup.test \
52  matrix_lookup_weighted.test matrix.test \
53  matrix_weighted.test merge.test nbc.test \
54  ncc.test nni.test normalization.test pca.test \
55  range.test regression.test rnd.test roc.test \
56  score.test  segment.test smart_ptr.test   \
57  smoother.test split.test statistics.test stream_redirect.test \
58  subset_generator.test svd.test svm.test \
59  svm_multi_class.test tukey.test target.test \
60  ttest.test \
61  utility.test vector.test version.test view.test
62
63TESTS = $(EXTRA_PROGRAMS)
64CLEANFILES = $(EXTRA_PROGRAMS)
65
66# tests not passing through yet
67XFAIL_TESTS =
68
69TESTS += documentation_test.sh
70
71DISTRIBUTED_TESTS = \
72help_test.sh \
73static_test.sh \
74yat_config_test.sh \
75yat_config_cblas_test.sh \
76yat_cpp_add_flag_test.sh \
77yat_cxx_add_flag_test.sh \
78yat_ld_add_flag_test.sh \
79yat_lt_link_ifelse_test.sh \
80yat_msg_error_test.sh \
81yat_msg_error_test2.sh \
82yat_m4_test.sh \
83yat_m4_test2.sh
84
85TESTS += $(DISTRIBUTED_TESTS)
86EXTRA_DIST = $(DISTRIBUTED_TESTS)
87
88TEST_EXTENSIONS = .sh .test
89
90LDADD = $(top_builddir)/yat/libyat.la libyattest.la $(YAT_LIBS)
91
92large_file_test_LDADD = libyattest.la
93
94libyattest_la_SOURCES = Suite.cc
95
96lazycheck:; $(MAKE) $(AM_MAKEFLAGS) check RECHECK_LOGS=
97
98# dependencies for lazycheck
99help_test.log: help.test common_defs.sh
100static_test.log: $(top_srcdir)/m4/yat.m4 common_defs.sh
101yat_config_test.log: $(top_builddir)/build_support/yat-config \
102  $(top_builddir)/build_support/for_installation/yat-config common_defs.sh
103yat_config_cblas_test.log: $(top_builddir)/build_support/yat-config \
104  common_defs.sh
105yat_cpp_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
106  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
107yat_cxx_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
108  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
109yat_ld_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
110  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
111yat_lt_link_ifelse_test.log: $(top_srcdir)/m4/yat_lt_link_ifelse.m4 \
112  common_defs.sh
113yat_m4_test.log:$(top_srcdir)/m4/yat.m4 common_defs.sh \
114  $(top_builddir)/build_support/yat-config
115yat_m4_test2.log:$(top_srcdir)/m4/yat.m4 common_defs.sh
116yat_msg_error_test.log:$(top_srcdir)/m4/yat_msg_error.m4 common_defs.sh
117yat_msg_error_test2.log:$(top_srcdir)/m4/yat_msg_error.m4 common_defs.sh
118
119## We always rerun documentation_test. When sources for doxygen have
120## not changed and a rerun would not be needed, the test is very
121## inexpensive because 'make doc' will not run anything, in other
122## words, we always run the test but let the logic for 'make doc' take
123## care of whether doxygen will run or not.
124documentation_test.log: FORCE
125
126
127# yat-hello is an example of a tiny package that uses yat
128noinst_DATA = $(srcdir)/yat-hello-1.0.tar.gz
129
130# Directory yat-hello contains what a developer would check out
131# from a VCS, i.e., no files generated by autotools.
132yat_hello_sources  =
133yat_hello_sources += $(srcdir)/yat-hello/configure.ac
134yat_hello_sources += $(srcdir)/yat-hello/Makefile.am
135yat_hello_sources += $(srcdir)/yat-hello/hello.cc
136
137EXTRA_DIST += $(yat_hello_sources)
138
139yat_hello_tmp_files =
140yat_hello_tmp_files += Makefile.in
141yat_hello_tmp_files += autom4te.cache
142yat_hello_tmp_files += aclocal.m4
143yat_hello_tmp_files += build-aux
144yat_hello_tmp_files += configure
145yat_hello_tmp_files += m4
146
147
148yat_hello_deps = $(yat_hello_sources)
149yat_hello_deps += $(top_srcdir)/m4/yat.m4
150## We depend on version.m4 so tarball is updated at every release (at least)
151yat_hello_deps += $(top_srcdir)/m4/version.m4
152
153EXTRA_DIST += $(srcdir)/yat-hello-1.0.tar.gz
154
155$(srcdir)/yat-hello-1.0.tar.gz: $(yat_hello_deps)
156  cd $(srcdir)/yat-hello \
157  && $(MKDIR_P) m4 \
158  && cp $(abs_top_srcdir)/m4/yat.m4 m4/ \
159  && autoreconf -ivf \
160  && ./configure --without-yat \
161  && $(MAKE) $(AM_MAKEFLAGS) dist \
162  && $(MAKE) $(AM_MAKEFLAGS) distclean \
163  && mv yat-hello-1.0.tar.gz .. \
164  && rm -rf $(yat_hello_tmp_files)
165
166installcheck-local: yat-hello-check
167
168yat-hello-check: $(srcdir)/yat-hello-1.0.tar.gz
169  GZIP=$(GZIP_ENV) gzip -dc $< | $(am__untar) \
170  && cd yat-hello-1.0 \
171  && ./configure --with-yat=$(bindir) \
172  && $(MAKE) $(AM_MAKEFLAGS) all \
173  && ./hello \
174  && cd .. \
175  && rm -rf yat-hello-1.0
176
177
178## test data
179EXTRA_DIST += \
180data/isoform.peaks \
181data/knni_matrix.data \
182data/knni_result.data \
183data/knni_weight.data \
184data/nm_alpha_linear_matlab.txt \
185data/nm_data_centralized.txt \
186data/nm_kernel.txt \
187data/nm_kernel2.txt \
188data/nm_kernel_gaussian.txt \
189data/nm_target_bin.txt \
190data/normalization_test.data \
191data/rank_data.txt \
192data/rank_target.txt \
193data/regression_gauss.data \
194data/small.gff2 \
195data/small.gff3 \
196data/sorlie_centroid_classes.txt \
197data/sorlie_centroid_data.txt \
198data/sorlie_centroid_predictions.txt \
199data/sorlie_centroids.txt \
200data/vector1.data \
201data/vector2.data \
202data/vector3.data \
203data/vector4.data \
204data/vector5.data \
205data/vector6.data \
206data/vector7.data \
207data/wenni_result.data \
208data/wenni_weight.data
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