source: trunk/test/Makefile.am @ 2510

## Process this file with automake to produce Makefile.in
##
## $Id: Makefile.am 2510 2011-07-08 23:41:43Z peter $

# Copyright (C) 2003 Daniel Dalevi, Jari Häkkinen
# Copyright (C) 2004 Jari Häkkinen, Peter Johansson, Cecilia Ritz
# Copyright (C) 2005 Jari Häkkinen, Peter Johansson
# Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson, Markus Ringnér
# Copyright (C) 2009, 2010, 2011 Peter Johansson
#
# This file is part of the yat library, http://dev.thep.lu.se/yat
#
# The yat library is free software; you can redistribute it
# and/or modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 3 of the
# License, or (at your option) any later version.
#
# The yat library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with yat. If not, see <http://www.gnu.org/licenses/>.

## we use suffix .cc for all source
AM_DEFAULT_SOURCE_EXT = .cc

noinst_HEADERS = Suite.h

check_LTLIBRARIES = libyattest.la

check_SCRIPTS = common_defs.sh

.PHONY: FORCE

clean-local:; rm -rf yathello testSubDir

FORCE:

EXTRA_PROGRAMS = alignment.test averager.test \
  codon.test commandline.test \
  concept.test \
  consensus_inputranker.test data_lookup_1d.test  \
  data_weight.test data_weight_proxy.test distance.test \
  dna.test ensemble.test feature_selection.test fileutil.test \
  fisher.test genomic_position.test getline_iterator.test \
  gff.test help.test histogram.test \
  igp.test index.test inputranker.test interpolation.test \
  iterator.test kernel_lookup.test kernel_pca.test kernel.test \
  knn.test kolmogorov_smirnov.test large_file.test matrix_lookup.test \
  matrix_lookup_weighted.test matrix.test \
  matrix_weighted.test merge.test nbc.test \
  ncc.test nni.test normalization.test pca.test \
  range.test regression.test rnd.test roc.test \
  score.test  segment.test smart_ptr.test   \
  smoother.test split.test statistics.test stream_redirect.test \
  subset_generator.test svd.test svm.test \
  svm_multi_class.test tukey.test target.test \
  ttest.test \
  utility.test vector.test version.test view.test 

TESTS = $(EXTRA_PROGRAMS)
CLEANFILES = $(EXTRA_PROGRAMS)

# tests not passing through yet
XFAIL_TESTS =

TESTS += documentation_test.sh

DISTRIBUTED_TESTS = \
help_test.sh \
static_test.sh \
yat_config_test.sh \
yat_config_cblas_test.sh \
yat_cpp_add_flag_test.sh \
yat_cxx_add_flag_test.sh \
yat_ld_add_flag_test.sh \
yat_lt_link_ifelse_test.sh \
yat_msg_error_test.sh \
yat_msg_error_test2.sh \
yat_m4_test.sh \
yat_m4_test2.sh

TESTS += $(DISTRIBUTED_TESTS)
EXTRA_DIST = $(DISTRIBUTED_TESTS)

TEST_EXTENSIONS = .sh .test

LDADD = $(top_builddir)/yat/libyat.la libyattest.la $(YAT_LIBS)

large_file_test_LDADD = libyattest.la

libyattest_la_SOURCES = Suite.cc

lazycheck:; $(MAKE) $(AM_MAKEFLAGS) check RECHECK_LOGS= 

# dependencies for lazycheck
help_test.log: help.test common_defs.sh
static_test.log: $(top_srcdir)/m4/yat.m4 common_defs.sh
yat_config_test.log: $(top_builddir)/build_support/yat-config \
  $(top_builddir)/build_support/for_installation/yat-config common_defs.sh
yat_config_cblas_test.log: $(top_builddir)/build_support/yat-config \
  common_defs.sh
yat_cpp_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
yat_cxx_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
yat_ld_add_flag_test.log: $(top_srcdir)/m4/yat_add_flag.m4 \
  $(top_srcdir)/m4/ax_check_flag.m4 common_defs.sh
yat_lt_link_ifelse_test.log: $(top_srcdir)/m4/yat_lt_link_ifelse.m4 \
  common_defs.sh
yat_m4_test.log:$(top_srcdir)/m4/yat.m4 common_defs.sh \
  $(top_builddir)/build_support/yat-config
yat_m4_test2.log:$(top_srcdir)/m4/yat.m4 common_defs.sh 
yat_msg_error_test.log:$(top_srcdir)/m4/yat_msg_error.m4 common_defs.sh 
yat_msg_error_test2.log:$(top_srcdir)/m4/yat_msg_error.m4 common_defs.sh 

## We always rerun documentation_test. When sources for doxygen have
## not changed and a rerun would not be needed, the test is very
## inexpensive because 'make doc' will not run anything, in other
## words, we always run the test but let the logic for 'make doc' take
## care of whether doxygen will run or not.
documentation_test.log: FORCE


# yat-hello is an example of a tiny package that uses yat
noinst_DATA = $(srcdir)/yat-hello-1.0.tar.gz

# Directory yat-hello contains what a developer would check out
# from a VCS, i.e., no files generated by autotools.
yat_hello_sources  =
yat_hello_sources += $(srcdir)/yat-hello/configure.ac
yat_hello_sources += $(srcdir)/yat-hello/Makefile.am
yat_hello_sources += $(srcdir)/yat-hello/hello.cc

EXTRA_DIST += $(yat_hello_sources)

yat_hello_tmp_files =
yat_hello_tmp_files += Makefile.in
yat_hello_tmp_files += autom4te.cache
yat_hello_tmp_files += aclocal.m4
yat_hello_tmp_files += build-aux
yat_hello_tmp_files += configure
yat_hello_tmp_files += m4


yat_hello_deps = $(yat_hello_sources) 
yat_hello_deps += $(top_srcdir)/m4/yat.m4 
## We depend on version.m4 so tarball is updated at every release (at least)
yat_hello_deps += $(top_srcdir)/m4/version.m4

EXTRA_DIST += $(srcdir)/yat-hello-1.0.tar.gz

$(srcdir)/yat-hello-1.0.tar.gz: $(yat_hello_deps) 
  cd $(srcdir)/yat-hello \
  && $(MKDIR_P) m4 \
  && cp $(abs_top_srcdir)/m4/yat.m4 m4/ \
  && autoreconf -ivf \
  && ./configure --without-yat \
  && $(MAKE) $(AM_MAKEFLAGS) dist \
  && $(MAKE) $(AM_MAKEFLAGS) distclean \
  && mv yat-hello-1.0.tar.gz .. \
  && rm -rf $(yat_hello_tmp_files) 

installcheck-local: yat-hello-check

yat-hello-check: $(srcdir)/yat-hello-1.0.tar.gz
  GZIP=$(GZIP_ENV) gzip -dc $< | $(am__untar) \
  && cd yat-hello-1.0 \
  && ./configure --with-yat=$(bindir) \
  && $(MAKE) $(AM_MAKEFLAGS) all \
  && ./hello \
  && cd .. \
  && rm -rf yat-hello-1.0


## test data
EXTRA_DIST += \
data/isoform.peaks \
data/knni_matrix.data \
data/knni_result.data \
data/knni_weight.data \
data/nm_alpha_linear_matlab.txt \
data/nm_data_centralized.txt \
data/nm_kernel.txt \
data/nm_kernel2.txt \
data/nm_kernel_gaussian.txt \
data/nm_target_bin.txt \
data/normalization_test.data \
data/rank_data.txt \
data/rank_target.txt \
data/regression_gauss.data \
data/small.gff2 \
data/small.gff3 \
data/sorlie_centroid_classes.txt \
data/sorlie_centroid_data.txt \
data/sorlie_centroid_predictions.txt \
data/sorlie_centroids.txt \
data/vector1.data \
data/vector2.data \
data/vector3.data \
data/vector4.data \
data/vector5.data \
data/vector6.data \
data/vector7.data \
data/wenni_result.data \
data/wenni_weight.data