1 | // $Id: consensus_inputranker_test.cc 828 2007-03-19 22:15:43Z peter $ |
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2 | |
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3 | /* |
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4 | Copyright (C) The authors contributing to this file. |
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5 | |
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6 | This file is part of the yat library, http://lev.thep.lu.se/trac/yat |
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7 | |
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8 | The yat library is free software; you can redistribute it and/or |
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9 | modify it under the terms of the GNU General Public License as |
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10 | published by the Free Software Foundation; either version 2 of the |
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11 | License, or (at your option) any later version. |
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12 | |
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13 | The yat library is distributed in the hope that it will be useful, |
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14 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 | General Public License for more details. |
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17 | |
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18 | You should have received a copy of the GNU General Public License |
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19 | along with this program; if not, write to the Free Software |
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20 | Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA |
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21 | 02111-1307, USA. |
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22 | */ |
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23 | |
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24 | #include "yat/classifier/ConsensusInputRanker.h" |
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25 | #include "yat/statistics/AUC.h" |
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26 | #include "yat/utility/matrix.h" |
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27 | #include "yat/classifier/MatrixLookup.h" |
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28 | #include "yat/classifier/CrossValidationSampler.h" |
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29 | #include "yat/classifier/IRRank.h" |
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30 | #include "yat/statistics/VectorFunction.h" |
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31 | |
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32 | #include <cstdlib> |
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33 | #include <fstream> |
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34 | #include <iostream> |
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35 | |
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36 | using namespace std; |
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37 | |
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38 | int main(const int argc,const char* argv[]) |
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39 | { |
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40 | std::ostream* error; |
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41 | if (argc>1 && argv[1]==std::string("-v")) |
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42 | error = &std::cerr; |
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43 | else { |
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44 | error = new std::ofstream("/dev/null"); |
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45 | if (argc>1) |
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46 | std::cout << "consensus_inputranker_test -v : for printing extra " |
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47 | << "information\n"; |
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48 | } |
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49 | *error << "testing consensus_inputranker" << std::endl; |
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50 | bool ok = true; |
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51 | |
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52 | ifstream is("data/rank_data.txt"); |
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53 | theplu::yat::utility::matrix data_tmp(is); |
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54 | theplu::yat::classifier::MatrixLookup data(data_tmp); |
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55 | is.close(); |
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56 | |
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57 | is.open("data/rank_target.txt"); |
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58 | theplu::yat::classifier::Target target(is); |
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59 | is.close(); |
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60 | |
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61 | |
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62 | theplu::yat::statistics::AUC roc; |
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63 | theplu::yat::classifier::CrossValidationSampler sampler(target,30,3); |
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64 | *error << "Building Consensus_Inputranker" << std::endl; |
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65 | theplu::yat::classifier::IRRank retrieve; |
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66 | theplu::yat::statistics::Median median; |
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67 | theplu::yat::classifier::ConsensusInputRanker cir(retrieve,median); |
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68 | cir.add(sampler,data,roc); |
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69 | |
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70 | *error << "test ids... "; |
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71 | if (cir.id(0)!=2 || cir.id(1)!=0 || cir.id(2)!=1){ |
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72 | *error << "\nincorrect id for weighted" << endl; |
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73 | ok=false; |
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74 | } |
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75 | else |
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76 | *error << "ok." << std::endl; |
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77 | |
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78 | *error << "test ranks... "; |
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79 | if (cir.rank(0)!=1 || cir.rank(1)!=2 || cir.rank(2)!=0){ |
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80 | *error << "\nincorrect rank for weighted" << endl; |
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81 | ok=false; |
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82 | } |
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83 | else |
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84 | *error << "ok." << std::endl; |
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85 | |
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86 | theplu::yat::utility::matrix flag(data.rows(),data.columns(),1); |
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87 | // Peter, fix weighted version instead |
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88 | theplu::yat::classifier::ConsensusInputRanker cir2(retrieve,median); |
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89 | cir2.add(sampler,data,roc); |
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90 | |
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91 | *error << "test ids... "; |
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92 | if (cir2.id(0)!=2 || cir2.id(1)!=0 || cir2.id(2)!=1){ |
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93 | *error << "\nincorrect id for weighted" << endl; |
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94 | ok=false; |
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95 | } |
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96 | else |
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97 | *error << "ok." << std::endl; |
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98 | |
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99 | *error << "test ranks... "; |
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100 | if (cir2.rank(0)!=1 || cir2.rank(1)!=2 || cir2.rank(2)!=0){ |
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101 | *error << "\nincorrect rank for weighted" << endl; |
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102 | ok=false; |
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103 | } |
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104 | else |
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105 | *error << "ok." << std::endl; |
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106 | |
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107 | if (error!=&std::cerr) |
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108 | delete error; |
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109 | |
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110 | if(ok) |
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111 | return 0; |
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112 | return -1; |
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113 | } |
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