source: trunk/test/phred.cc @ 3325

Last change on this file since 3325 was 3325, checked in by Peter, 7 years ago

new functions phred and phred_inv that calculate phred scaled probability and its inverse, respectively.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
File size: 1.4 KB
Line 
1// $Id: phred.cc 3325 2014-10-07 01:44:54Z peter $
2
3/*
4  Copyright (C) 2014 Peter Johansson
5
6  This file is part of the yat library, http://dev.thep.lu.se/yat
7
8  The yat library is free software; you can redistribute it and/or
9  modify it under the terms of the GNU General Public License as
10  published by the Free Software Foundation; either version 3 of the
11  License, or (at your option) any later version.
12
13  The yat library is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
16  General Public License for more details.
17
18  You should have received a copy of the GNU General Public License
19  along with yat. If not, see <http://www.gnu.org/licenses/>.
20*/
21
22#include <config.h>
23
24#include "Suite.h"
25
26#include <yat/omic/phred.h>
27
28#include <utility>
29#include <vector>
30
31using namespace theplu::yat;
32
33int main(int argc, char* argv[])
34{
35  test::Suite suite(argc, argv);
36
37  std::vector<std::pair<double, double> > data;
38  data.push_back(std::make_pair(0.1, 10.0));
39  data.push_back(std::make_pair(0.01, 20.0));
40  data.push_back(std::make_pair(0.0001, 40.0));
41
42
43  for (size_t i=0; i<data.size(); ++i) {
44    double phred = omic::phred(data[i].first);
45    if (!suite.equal(phred, data[i].second))
46      suite.add(false);
47    double x = omic::phred_inv(data[i].second);
48    if (!suite.equal(x, data[i].first))
49      suite.add(false);
50  }
51
52  return suite.return_value();
53}
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