source: trunk/test

Name Size Rev Age Author Last Change
../
data 3987   13 months Peter merge release 0.17.2 into trunk
yat-hello 4089   2 weeks Peter updating copyright years
alignment2.cc 2.8 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   7 years Peter update copyright years
bam.cc 12.3 KB 3999   12 months Peter update copyright years
bam_header2.cc 1.7 KB 3999   12 months Peter update copyright years
bam_header.cc 5.2 KB 3999   12 months Peter update copyright years
bam_iterator.cc 3.7 KB 3999   12 months Peter update copyright years
bam_pair.cc 1.7 KB 3883   18 months Peter remove support for building against libbam (which allows us to remove …
bam_pair_analyse.cc 1.7 KB 3999   12 months Peter update copyright years
bam_pair_buffer.cc 2.7 KB 4057   6 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
bam_pair_iterator2.cc 2.2 KB 3883   18 months Peter remove support for building against libbam (which allows us to remove …
bam_pair_iterator.cc 2.5 KB 3999   12 months Peter update copyright years
bam_read_filter.cc 1.7 KB 3999   12 months Peter update copyright years
bam_region_iterator.cc 2.6 KB 3999   12 months Peter update copyright years
binary_read_write.cc 2.6 KB 3910   17 months Peter add missing file
chi2.cc 1.9 KB 3726   4 years Peter correct include
cigar2.cc 1.7 KB 3342   7 years Peter merge 0.12.2 into trunk
cigar.cc 4.3 KB 4003   11 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
cigar_iterator.cc 2.8 KB 3417   6 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   8 years Peter update copyright years
codon.cc 1.8 KB 3330   7 years Peter update copyright years
commandline.cc 18.2 KB 2893   9 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   9 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   9 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   6 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   9 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   8 years Peter update copyright years
data_weight.cc 1.6 KB 2919   9 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   7 years Peter update copyright years
defs.sh.in 4.9 KB 3999   12 months Peter update copyright years
deleter.cc 1.2 KB 4089   2 weeks Peter updating copyright years
diagonal_matrix.cc 3.5 KB 3660   4 years Peter missing include
distance.cc 9.0 KB 3550   5 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   5 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.7 KB 4062   4 months Peter merged r4061 into trunk
ensemble.cc 5.7 KB 2919   9 years Peter update copyright years
fasta.cc 2.6 KB 3999   12 months Peter update copyright years
feature_selection.cc 3.4 KB 2919   9 years Peter update copyright years
fileutil.cc 6.6 KB 3966   14 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
fisher.cc 6.4 KB 3743   3 years Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   4 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3999   12 months Peter update copyright years
gen_libmy_static.sh 1.5 KB 3130   8 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   9 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   9 years Peter update copyright years
getvector.cc 2.5 KB 3930   15 months Peter merge release 0.17.1 into trunk
gff.cc 4.7 KB 3875   19 months Peter merge release 0.17 into trunk
gsl_error_handler.cc 1.4 KB 3963   14 months Peter new function supposed to be used by GSL error handler, resulting in a …
help.cc 1.2 KB 2919   9 years Peter update copyright years
help_test.sh 1.3 KB 3114   8 years Peter update copyright years
histogram.cc 2.2 KB 2919   9 years Peter update copyright years
igp.cc 1.4 KB 2919   9 years Peter update copyright years
index.cc 2.7 KB 2919   9 years Peter update copyright years
init.sh 2.5 KB 3036   8 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   9 years Peter update copyright years
interpolation.cc 3.8 KB 3966   14 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
iterator.cc 22.6 KB 3534   5 years Peter move test::weighted_iterator_archetype to …
kendall.cc 5.6 KB 4089   2 weeks Peter updating copyright years
kernel.cc 7.3 KB 2919   9 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   9 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   7 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   9 years Peter update copyright years
knn.cc 11.2 KB 2919   9 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   8 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   8 years Peter update copyright years
libbam.cc 1.4 KB 3888   18 months Peter fix compilation errors in --with-htslib mode introduced in r3883, refs #939
likelihood_ratio_test_binomial.cc 1.4 KB 3138   8 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   9 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 13.8 KB 4083   4 weeks Peter merge kendall-score branch into trunk. refs #710
matrix.cc 7.7 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 4.2 KB 3999   12 months Peter update copyright years
matrix_lookup.cc 6.3 KB 2919   9 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   9 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   9 years Peter update copyright years
merge.cc 3.3 KB 2919   9 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   6 years Peter updating copyright statements
multiprocess.cc 2.2 KB 4044   7 months Peter new function multiprocess; closes #958
nbc.cc 1.8 KB 2919   9 years Peter update copyright years
ncc.cc 11.4 KB 2919   9 years Peter update copyright years
negative_binomial.cc 5.1 KB 3999   12 months Peter update copyright years
nni.cc 5.9 KB 2919   9 years Peter update copyright years
normalization.cc 21.2 KB 3999   12 months Peter update copyright years
ostream_iterator.cc 1.6 KB 3152   8 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   9 years Peter update copyright years
percentile_confidence_interval.cc 2.9 KB 4036   8 months Peter closes #963. New class PercentileConfidenceInterval?
perceptron.cc 5.3 KB 3709   4 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.8 KB 3999   12 months Peter update copyright years
poisson.cc 4.1 KB 3662   4 years Peter close #882
print_what.cc 1.7 KB 3938   14 months Peter let configure fail if compiler is not a C++11 compiler. …
priority_queue.cc 2.4 KB 3999   12 months Peter update copyright years
queue2.cc 1.9 KB 3999   12 months Peter update copyright years
queue3.cc 2.6 KB 4043   7 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
queue.cc 1.7 KB 3999   12 months Peter update copyright years
range.cc 1.5 KB 3330   7 years Peter update copyright years
ranking.cc 8.5 KB 4083   4 weeks Peter merge kendall-score branch into trunk. refs #710
README 4.6 KB 2754   9 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.3 KB 3855   21 months Peter updating copyright statements
rnd.cc 2.4 KB 4009   11 months Peter closes #965; Default constructor for DiscreteGeneral?
rng-mt.cc 3.6 KB 3999   12 months Peter update copyright years
roc.cc 11.8 KB 3439   6 years Peter merge release 0.13 into trunk
round.cc 1.8 KB 4059   5 months Peter new function: round, which is rounding elements in a range with the …
scheduler2.cc 2.6 KB 3855   21 months Peter updating copyright statements
scheduler3.cc 2.1 KB 3855   21 months Peter updating copyright statements
scheduler4.cc 1.9 KB 3686   4 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   2 years Peter Merge release 0.16 into trunk
scheduler6.cc 2.0 KB 3828   2 years Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
scheduler7.cc 2.3 KB 3848   2 years Peter add functionality to alter number of threads used by Scheduler. closes #910
scheduler.cc 2.5 KB 3851   22 months Peter merge release 0.16.3 into trunk.
score.cc 3.9 KB 2919   9 years Peter update copyright years
segment.cc 14.6 KB 4032   8 months Peter merge release 0.18.1 into trunk
smart_ptr.cc 1.3 KB 2919   9 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   7 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   5 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   9 years Peter update copyright years
split.cc 2.4 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 13.4 KB 4089   2 weeks Peter updating copyright years
stream_redirect.cc 3.7 KB 2919   9 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   9 years Peter update copyright years
Suite.cc 4.7 KB 4089   2 weeks Peter updating copyright years
Suite.h 21.9 KB 4089   2 weeks Peter updating copyright years
svd.cc 3.6 KB 2919   9 years Peter update copyright years
svm.cc 4.6 KB 2919   9 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   9 years Peter update copyright years
target.cc 3.4 KB 2919   9 years Peter update copyright years
ttest.cc 1.7 KB 3114   8 years Peter update copyright years
tukey.cc 2.7 KB 3875   19 months Peter merge release 0.17 into trunk
utility.cc 24.4 KB 4102   8 hours Peter add wrapper function that calls std::string::contains, ::starts_with, …
vcf.cc 5.4 KB 4089   2 weeks Peter updating copyright years
vcf_compare.cc 1004 bytes 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   3 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file3.cc 1.1 KB 4045   7 months Peter add missing file
vcf_file.cc 2.1 KB 3774   3 years Peter implement VcfIterator?. refs #905
vcf_header.cc 2.3 KB 3999   12 months Peter update copyright years
vector.cc 13.9 KB 3987   13 months Peter merge release 0.17.2 into trunk
vector_expression.cc 6.1 KB 3677   4 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   8 years Peter update copyright years
view.cc 4.3 KB 3661   4 years Peter update copyright years
weighted_iterator_archetype.cc 5.4 KB 3579   5 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   8 years Peter update copyright years
yat_config_test.sh 1.7 KB 3855   21 months Peter updating copyright statements
yat_cpp_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   8 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3999   12 months Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3855   21 months Peter updating copyright statements
yat_ld_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 2.0 KB 3855   21 months Peter updating copyright statements
yat_lt_link_ifelse_test.sh 2.4 KB 3855   21 months Peter updating copyright statements
yat_lt_link_la_ifelse_test.sh 1.5 KB 3855   21 months Peter updating copyright statements
yat_m4_test2.sh 1.5 KB 3999   12 months Peter update copyright years
yat_m4_test.sh 1.7 KB 3855   21 months Peter updating copyright statements
yat_m4_with_bam_test.sh 1.4 KB 3855   21 months Peter updating copyright statements
yat_msg_error_test2.sh 1.2 KB 3330   7 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3855   21 months Peter updating copyright statements
yat_pc_test.sh 3.2 KB 4019   11 months Peter merge 0.18 into trunk
yat_prog_move_if_change_test.sh 1.2 KB 3114   8 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3855   21 months Peter updating copyright statements
yat_svn_release_year_test.sh 1.8 KB 3999   12 months Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3999   12 months Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   7 years Peter update copyright years
  • Property svn:ignore set to
    .deps
    Makefile.in
    Makefile
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