source: trunk/test @ 3227

Name Size Rev Age Author Last Change
../
data 2888   9 years Peter add example SAM file. refs #729
yat-hello 3170   8 years Peter in yat-hello-check test that versions agree. refs #771.
alignment2.cc 2.8 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.8 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
bam.cc 6.8 KB 3201   7 years Peter add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
bam_header2.cc 1.7 KB 3210   7 years Peter update copyright years
bam_header.cc 2.3 KB 3210   7 years Peter update copyright years
bam_iterator.cc 3.6 KB 3210   7 years Peter update copyright years
bam_pair_analyse.cc 1.6 KB 3210   7 years Peter update copyright years
bam_pair_iterator.cc 2.5 KB 3209   7 years Peter add missing source file and fix compilation error --without-samtools
bam_read_filter.cc 1.7 KB 3210   7 years Peter update copyright years
bam_region_iterator.cc 2.4 KB 3210   7 years Peter update copyright years
cigar.cc 3.4 KB 3213   7 years Peter three new cigar functions
cmd_test.sh 978 bytes 3114   8 years Peter update copyright years
codon.cc 1.8 KB 2919   9 years Peter update copyright years
commandline.cc 18.2 KB 2893   9 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   9 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   9 years Peter update copyright years
crossvalidation.cc 2.5 KB 2919   9 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   8 years Peter update copyright years
data_weight.cc 1.6 KB 2919   9 years Peter update copyright years
data_weight_proxy.cc 3.0 KB 3114   8 years Peter update copyright years
defs.sh.in 3.9 KB 3112   8 years Peter In tests issue configure with --disable-shared/--disable-static if yat …
deleter.cc 1.3 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
distance.cc 8.9 KB 2919   9 years Peter update copyright years
dna.cc 3.4 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
doxygen_test.sh 1.1 KB 3114   8 years Peter update copyright years
ensemble.cc 5.7 KB 2919   9 years Peter update copyright years
feature_selection.cc 3.4 KB 2919   9 years Peter update copyright years
fileutil.cc 6.6 KB 2919   9 years Peter update copyright years
fisher.cc 3.8 KB 3114   8 years Peter update copyright years
gen_libmy_shared.sh 1.8 KB 3130   8 years Peter merge release 0.11 into trunk
gen_libmy_static.sh 1.5 KB 3130   8 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   9 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   9 years Peter update copyright years
gff.cc 3.1 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
help.cc 1.2 KB 2919   9 years Peter update copyright years
help_test.sh 1.3 KB 3114   8 years Peter update copyright years
histogram.cc 2.2 KB 2919   9 years Peter update copyright years
igp.cc 1.4 KB 2919   9 years Peter update copyright years
index.cc 2.7 KB 2919   9 years Peter update copyright years
init.sh 2.5 KB 3036   8 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   9 years Peter update copyright years
interpolation.cc 3.8 KB 2919   9 years Peter update copyright years
iterator.cc 16.7 KB 3059   8 years Peter add test that we can modify data() and weight() elements via …
kendall.cc 4.0 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
kernel.cc 7.3 KB 2919   9 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   9 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   7 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   9 years Peter update copyright years
knn.cc 11.2 KB 2919   9 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   8 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   8 years Peter update copyright years
likelihood_ratio_test_binomial.cc 1.4 KB 3138   8 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   9 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 11.1 KB 3205   7 years Peter implement new class SmithWaterman?
matrix.cc 7.7 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_lookup.cc 6.3 KB 2919   9 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   9 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   9 years Peter update copyright years
merge.cc 3.3 KB 2919   9 years Peter update copyright years
merge_iterator.cc 3.1 KB 2995   9 years Peter closes #741. New class MergeIterator?
nbc.cc 1.8 KB 2919   9 years Peter update copyright years
ncc.cc 11.4 KB 2919   9 years Peter update copyright years
nni.cc 5.9 KB 2919   9 years Peter update copyright years
normalization.cc 17.3 KB 2919   9 years Peter update copyright years
ostream_iterator.cc 1.6 KB 3152   8 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   9 years Peter update copyright years
queue2.cc 1.9 KB 3063   8 years Peter add another test for new class Queue
queue.cc 1.7 KB 3062   8 years Peter implement copy and assignment (compiler generated does not compile …
range.cc 1.4 KB 2919   9 years Peter update copyright years
README 4.6 KB 2754   9 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.2 KB 3114   8 years Peter update copyright years
rnd.cc 1.9 KB 2919   9 years Peter update copyright years
rng-mt.cc 3.6 KB 2943   9 years Peter merge release 0.10 into trunk
roc.cc 11.6 KB 3114   8 years Peter update copyright years
score.cc 3.9 KB 2919   9 years Peter update copyright years
segment.cc 8.7 KB 2919   9 years Peter update copyright years
smart_ptr.cc 1.3 KB 2919   9 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   7 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.6 KB 2919   9 years Peter update copyright years
spearman.cc 4.7 KB 2919   9 years Peter update copyright years
split.cc 2.4 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
static_test.sh 1.4 KB 3210   7 years Peter update copyright years
statistics.cc 11.0 KB 3137   8 years Peter closes #772. new function that calculates mutual information
stream_redirect.cc 3.7 KB 2919   9 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   9 years Peter update copyright years
Suite.cc 3.9 KB 3210   7 years Peter update copyright years
Suite.h 14.1 KB 3210   7 years Peter update copyright years
svd.cc 3.6 KB 2919   9 years Peter update copyright years
svm.cc 4.6 KB 2919   9 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   9 years Peter update copyright years
target.cc 3.4 KB 2919   9 years Peter update copyright years
ttest.cc 1.7 KB 3114   8 years Peter update copyright years
tukey.cc 2.0 KB 2919   9 years Peter update copyright years
utility.cc 17.9 KB 3210   7 years Peter update copyright years
vector.cc 11.2 KB 2919   9 years Peter update copyright years
version.cc 1.8 KB 3114   8 years Peter update copyright years
view.cc 4.2 KB 2919   9 years Peter update copyright years
yat_config_cblas_test.sh 1.0 KB 3114   8 years Peter update copyright years
yat_config_test.sh 1.3 KB 3188   7 years Peter merge patch release 0.11.2
yat_cpp_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   8 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3114   8 years Peter update copyright years
yat_ld_add_flag_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 1.9 KB 3113   8 years Peter change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the linking tests …
yat_lt_link_ifelse_test.sh 2.4 KB 3114   8 years Peter update copyright years
yat_lt_link_la_ifelse_test.sh 1.5 KB 3130   8 years Peter merge release 0.11 into trunk
yat_m4_test2.sh 1.5 KB 3114   8 years Peter update copyright years
yat_m4_test.sh 1.6 KB 3112   8 years Peter In tests issue configure with --disable-shared/--disable-static if yat …
yat_m4_with_bam_test.sh 1.4 KB 3112   8 years Peter In tests issue configure with --disable-shared/--disable-static if yat …
yat_msg_error_test2.sh 1.2 KB 3227   7 years Peter improve 'required' field. The tests use aclocal via the bootstrap …
yat_msg_error_test.sh 1.5 KB 3227   7 years Peter improve 'required' field. The tests use aclocal via the bootstrap …
yat_pc_test.sh 2.5 KB 3112   8 years Peter In tests issue configure with --disable-shared/--disable-static if yat …
yat_prog_move_if_change_test.sh 1.2 KB 3114   8 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3114   8 years Peter update copyright years
yat_svn_release_year_test.sh 1.8 KB 3114   8 years Peter update copyright years
yat_svn_revision_test.sh 1.3 KB 3114   8 years Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3227   7 years Peter improve 'required' field. The tests use aclocal via the bootstrap …
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