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data
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add two new functions read_group and program_group to access data in …
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yat-hello
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alignment2.cc
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alignment.cc
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averager1.cc
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averager4.cc
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Define PP variables in config.h rather than in CPPFLAGS. Include …
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averager.cc
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bam.cc
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bam_header2.cc
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bam_header.cc
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document BamHeader::read_group_iterator. closes #879
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bam_iterator.cc
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bam_pair_analyse.cc
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bam_pair_iterator.cc
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bam_read_filter.cc
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bam_region_iterator.cc
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cigar2.cc
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merge 0.12.2 into trunk
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cigar.cc
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3213
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three new cigar functions
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cigar_iterator.cc
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updating copyright statements
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cmd_test.sh
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codon.cc
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commandline.cc
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run (also C++) tests in specific test dir so test can create temporary …
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concept.cc
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consensus_inputranker.cc
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copy_k_of_n.cc
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closes #838
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crossvalidation.cc
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data_lookup_1d.cc
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data_weight.cc
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data_weight_proxy.cc
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defs.sh.in
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deleter.cc
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distance.cc
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Peter |
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dna.cc
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3.4 KB
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Define PP variables in config.h rather than in CPPFLAGS. Include …
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dna_reverse_complement.cc
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Use boost iterator concepts (refs #803); avoid two loops in …
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doxygen_test.sh
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ensemble.cc
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fasta.cc
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merge release 0.14 into trunk
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feature_selection.cc
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fileutil.cc
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fisher.cc
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gen_libmy_shared.sh
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gen_libmy_static.sh
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genomic_position.cc
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getline_iterator.cc
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gff.cc
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help.cc
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help_test.sh
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histogram.cc
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igp.cc
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index.cc
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init.sh
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common_defs does two things: 1) init test scripts 2) defines some …
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inputranker.cc
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interpolation.cc
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iterator.cc
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move test::weighted_iterator_archetype to …
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kendall.cc
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2881
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Define PP variables in config.h rather than in CPPFLAGS. Include …
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kernel.cc
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kernel_lookup.cc
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kernel_matrix.cc
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1.6 KB
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new class KernelMatrix?. closes #381
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kernel_pca.cc
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2919
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knn.cc
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11.2 KB
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kolmogorov_smirnov.cc
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7.3 KB
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3018
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Peter |
merge patch release 0.10.2 into trunk
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large_file.cc
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1.5 KB
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3114
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likelihood_ratio_test_binomial.cc
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1.4 KB
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3138
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Peter |
change name of class and implement function llr(). closes #769
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Makefile
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798 bytes
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2749
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Peter |
add small convenience Makefiles in subdirs. closes #703
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Makefile.am
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12.5 KB
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3615
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Peter |
some trivial tests for regression::Poisson. refs #882
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matrix.cc
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Define PP variables in config.h rather than in CPPFLAGS. Include …
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matrix_expression.cc
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Peter |
negation operator for Vector and Matrix
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matrix_lookup.cc
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6.3 KB
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2919
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matrix_lookup_weighted.cc
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3.3 KB
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2919
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matrix_weighted.cc
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3.1 KB
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merge.cc
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merge_iterator.cc
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nbc.cc
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ncc.cc
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nni.cc
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normalization.cc
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17.8 KB
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Peter |
Update copyright years. Happy New Year
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ostream_iterator.cc
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1.6 KB
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3152
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Peter |
add missing source file. refs #770
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pca.cc
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1.6 KB
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phred.cc
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1.4 KB
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3325
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new functions phred and phred_inv that calculate phred scaled …
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pileup.cc
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8.8 KB
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3439
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merge release 0.13 into trunk
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poisson.cc
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1.3 KB
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3615
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Peter |
some trivial tests for regression::Poisson. refs #882
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priority_queue.cc
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3403
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add constructor that takes compare functor
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queue2.cc
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3063
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add another test for new class Queue
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queue.cc
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implement copy and assignment (compiler generated does not compile …
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range.cc
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README
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4.6 KB
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avoid suggesting bug reports to trac, prefer single quote (rather than …
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regression.cc
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rnd.cc
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2.2 KB
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3469
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New class for NegativeHyperGeometric?. closes #857. The implementation …
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rng-mt.cc
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2943
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merge release 0.10 into trunk
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roc.cc
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merge release 0.13 into trunk
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scheduler2.cc
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3402
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add interface to set priority of Scheduler::Job and make the order the …
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scheduler3.cc
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3423
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merge from 0.13-stable branch. Avoid compiler warnings also in trunk.
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scheduler.cc
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updating copyright statements
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score.cc
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segment.cc
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implement make_segment. closes #834
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smart_ptr.cc
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smith_waterman.cc
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add missing source file and fix compilation error --without-samtools
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smoother.cc
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spearman.cc
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4.7 KB
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2919
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split.cc
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2.4 KB
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Define PP variables in config.h rather than in CPPFLAGS. Include …
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statistics.cc
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Peter |
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stream_redirect.cc
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3.7 KB
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2919
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10 years
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Peter |
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subset_generator.cc
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11.3 KB
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2919
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Suite.cc
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3.9 KB
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3439
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Peter |
merge release 0.13 into trunk
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Suite.h
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21.0 KB
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3550
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Peter |
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svd.cc
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3.6 KB
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svm.cc
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svm_multi_class.cc
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target.cc
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ttest.cc
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tukey.cc
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Peter |
Update copyright years. Happy New Year
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utility.cc
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22.3 KB
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3597
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Peter |
closes #828, function convert_try
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vector.cc
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3612
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Peter |
test for refs #884
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vector_expression.cc
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3610
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Peter |
negation operator for Vector and Matrix
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version.cc
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view.cc
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4.3 KB
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implicit conversion from VectorView? to VectorConstView?. closes #474
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weighted_iterator_archetype.cc
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3579
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Peter |
merge release 0.14 into trunk
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yat_config_cblas_test.sh
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3114
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yat_config_test.sh
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3188
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merge patch release 0.11.2
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yat_cpp_add_flag_test.sh
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3114
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Peter |
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yat_cxx_add_flag_test.sh
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yat_have_svn_wc_test.sh
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3114
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yat_header_assert_test.sh
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test for YAT_HEADER_ASSERT
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yat_ld_add_flag_test.sh
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3114
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yat_lt_compile_ifelse_test.sh
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change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the linking tests …
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3114
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yat_lt_link_la_ifelse_test.sh
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yat_m4_test2.sh
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yat_m4_test.sh
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In tests issue configure with --disable-shared/--disable-static if yat …
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yat_m4_with_bam_test.sh
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refs #878
Modify macro YAT_CHECK_HEADER so it adds …
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yat_msg_error_test2.sh
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3330
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yat_msg_error_test.sh
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yat_pc_test.sh
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refs #878
Modify macro YAT_CHECK_HEADER so it adds …
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yat_prog_move_if_change_test.sh
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yat_revision_header_test.sh
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yat_svn_release_year_test.sh
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yat_svn_revision_test.sh
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yat_use_libtool_tag_test.sh
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Peter |
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