source: trunk/test @ 3615

Name Size Rev Age Author Last Change
../
data 3410   8 years Peter add two new functions read_group and program_group to access data in …
yat-hello 3330   8 years Peter update copyright years
alignment2.cc 2.8 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   8 years Peter update copyright years
bam.cc 10.2 KB 3486   7 years Peter remove commented code
bam_header2.cc 1.7 KB 3210   9 years Peter update copyright years
bam_header.cc 5.2 KB 3599   6 years Peter document BamHeader::read_group_iterator. closes #879
bam_iterator.cc 3.6 KB 3210   9 years Peter update copyright years
bam_pair_analyse.cc 1.7 KB 3295   9 years Peter merge release 0.12 into trunk
bam_pair_iterator.cc 2.5 KB 3295   9 years Peter merge release 0.12 into trunk
bam_read_filter.cc 1.7 KB 3210   9 years Peter update copyright years
bam_region_iterator.cc 2.4 KB 3210   9 years Peter update copyright years
cigar2.cc 1.7 KB 3342   8 years Peter merge 0.12.2 into trunk
cigar.cc 3.4 KB 3213   9 years Peter three new cigar functions
cigar_iterator.cc 2.8 KB 3417   8 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   9 years Peter update copyright years
codon.cc 1.8 KB 3330   8 years Peter update copyright years
commandline.cc 18.2 KB 2893   10 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   10 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   10 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   7 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   10 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   9 years Peter update copyright years
data_weight.cc 1.6 KB 2919   10 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   8 years Peter update copyright years
defs.sh.in 4.0 KB 3417   8 years Peter updating copyright statements
deleter.cc 1.3 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
distance.cc 9.0 KB 3550   6 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 1.7 KB 3517   6 years Peter Use boost iterator concepts (refs #803); avoid two loops in …
doxygen_test.sh 1.1 KB 3114   9 years Peter update copyright years
ensemble.cc 5.7 KB 2919   10 years Peter update copyright years
fasta.cc 2.6 KB 3579   6 years Peter merge release 0.14 into trunk
feature_selection.cc 3.4 KB 2919   10 years Peter update copyright years
fileutil.cc 6.6 KB 2919   10 years Peter update copyright years
fisher.cc 4.3 KB 3455   7 years Peter update copyright years
gen_libmy_shared.sh 1.8 KB 3130   9 years Peter merge release 0.11 into trunk
gen_libmy_static.sh 1.5 KB 3130   9 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   10 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   10 years Peter update copyright years
gff.cc 3.1 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
help.cc 1.2 KB 2919   10 years Peter update copyright years
help_test.sh 1.3 KB 3114   9 years Peter update copyright years
histogram.cc 2.2 KB 2919   10 years Peter update copyright years
igp.cc 1.4 KB 2919   10 years Peter update copyright years
index.cc 2.7 KB 2919   10 years Peter update copyright years
init.sh 2.5 KB 3036   10 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   10 years Peter update copyright years
interpolation.cc 3.8 KB 2919   10 years Peter update copyright years
iterator.cc 22.6 KB 3534   6 years Peter move test::weighted_iterator_archetype to …
kendall.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
kernel.cc 7.3 KB 2919   10 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   10 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   9 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   10 years Peter update copyright years
knn.cc 11.2 KB 2919   10 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   10 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   9 years Peter update copyright years
likelihood_ratio_test_binomial.cc 1.4 KB 3138   9 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   11 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 12.5 KB 3615   6 years Peter some trivial tests for regression::Poisson. refs #882
matrix.cc 7.7 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 3.3 KB 3610   6 years Peter negation operator for Vector and Matrix
matrix_lookup.cc 6.3 KB 2919   10 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   10 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   10 years Peter update copyright years
merge.cc 3.3 KB 2919   10 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   8 years Peter updating copyright statements
nbc.cc 1.8 KB 2919   10 years Peter update copyright years
ncc.cc 11.4 KB 2919   10 years Peter update copyright years
nni.cc 5.9 KB 2919   10 years Peter update copyright years
normalization.cc 17.8 KB 3550   6 years Peter Update copyright years. Happy New Year
ostream_iterator.cc 1.6 KB 3152   9 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   10 years Peter update copyright years
phred.cc 1.4 KB 3325   8 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.8 KB 3439   7 years Peter merge release 0.13 into trunk
poisson.cc 1.3 KB 3615   6 years Peter some trivial tests for regression::Poisson. refs #882
priority_queue.cc 2.1 KB 3403   8 years Peter add constructor that takes compare functor
queue2.cc 1.9 KB 3063   10 years Peter add another test for new class Queue
queue.cc 1.7 KB 3062   10 years Peter implement copy and assignment (compiler generated does not compile …
range.cc 1.5 KB 3330   8 years Peter update copyright years
README 4.6 KB 2754   11 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.2 KB 3550   6 years Peter Update copyright years. Happy New Year
rnd.cc 2.2 KB 3469   7 years Peter New class for NegativeHyperGeometric?. closes #857. The implementation …
rng-mt.cc 3.6 KB 2943   10 years Peter merge release 0.10 into trunk
roc.cc 11.8 KB 3439   7 years Peter merge release 0.13 into trunk
scheduler2.cc 2.5 KB 3402   8 years Peter add interface to set priority of Scheduler::Job and make the order the …
scheduler3.cc 2.1 KB 3423   7 years Peter merge from 0.13-stable branch. Avoid compiler warnings also in trunk.
scheduler.cc 2.0 KB 3417   8 years Peter updating copyright statements
score.cc 3.9 KB 2919   10 years Peter update copyright years
segment.cc 9.6 KB 3598   6 years Peter implement make_segment. closes #834
smart_ptr.cc 1.3 KB 2919   10 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   9 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   6 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   10 years Peter update copyright years
split.cc 2.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 12.5 KB 3550   6 years Peter Update copyright years. Happy New Year
stream_redirect.cc 3.7 KB 2919   10 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   10 years Peter update copyright years
Suite.cc 3.9 KB 3439   7 years Peter merge release 0.13 into trunk
Suite.h 21.0 KB 3550   6 years Peter Update copyright years. Happy New Year
svd.cc 3.6 KB 2919   10 years Peter update copyright years
svm.cc 4.6 KB 2919   10 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   10 years Peter update copyright years
target.cc 3.4 KB 2919   10 years Peter update copyright years
ttest.cc 1.7 KB 3114   9 years Peter update copyright years
tukey.cc 2.6 KB 3550   6 years Peter Update copyright years. Happy New Year
utility.cc 22.3 KB 3597   6 years Peter closes #828, function convert_try
vector.cc 12.7 KB 3612   6 years Peter test for refs #884
vector_expression.cc 5.8 KB 3610   6 years Peter negation operator for Vector and Matrix
version.cc 1.8 KB 3114   9 years Peter update copyright years
view.cc 4.3 KB 3595   6 years Peter implicit conversion from VectorView? to VectorConstView?. closes #474
weighted_iterator_archetype.cc 5.4 KB 3579   6 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   9 years Peter update copyright years
yat_config_test.sh 1.3 KB 3188   9 years Peter merge patch release 0.11.2
yat_cpp_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   9 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3114   9 years Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3228   9 years Peter test for YAT_HEADER_ASSERT
yat_ld_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 1.9 KB 3113   9 years Peter change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the linking tests …
yat_lt_link_ifelse_test.sh 2.4 KB 3114   9 years Peter update copyright years
yat_lt_link_la_ifelse_test.sh 1.5 KB 3130   9 years Peter merge release 0.11 into trunk
yat_m4_test2.sh 1.5 KB 3114   9 years Peter update copyright years
yat_m4_test.sh 1.6 KB 3112   9 years Peter In tests issue configure with --disable-shared/--disable-static if yat …
yat_m4_with_bam_test.sh 1.4 KB 3588   6 years Peter refs #878 Modify macro YAT_CHECK_HEADER so it adds …
yat_msg_error_test2.sh 1.2 KB 3330   8 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3330   8 years Peter update copyright years
yat_pc_test.sh 3.1 KB 3588   6 years Peter refs #878 Modify macro YAT_CHECK_HEADER so it adds …
yat_prog_move_if_change_test.sh 1.2 KB 3114   9 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_svn_release_year_test.sh 1.8 KB 3114   9 years Peter update copyright years
yat_svn_revision_test.sh 1.3 KB 3114   9 years Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   8 years Peter update copyright years
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