source: trunk/test @ 3827

Name Size Rev Age Author Last Change
../
data 3763   4 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
yat-hello 3330   8 years Peter update copyright years
alignment2.cc 2.8 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   8 years Peter update copyright years
bam.cc 12.0 KB 3733   5 years Peter convenience functions to access strand of alignment
bam_header2.cc 1.7 KB 3210   9 years Peter update copyright years
bam_header.cc 5.2 KB 3661   5 years Peter update copyright years
bam_iterator.cc 3.7 KB 3698   5 years Peter merge release 0.14.4 into trunk
bam_pair_analyse.cc 1.7 KB 3295   8 years Peter merge release 0.12 into trunk
bam_pair_iterator.cc 2.5 KB 3295   8 years Peter merge release 0.12 into trunk
bam_read_filter.cc 1.7 KB 3210   9 years Peter update copyright years
bam_region_iterator.cc 2.6 KB 3682   5 years Peter update copyright years
chi2.cc 1.9 KB 3726   5 years Peter correct include
cigar2.cc 1.7 KB 3342   8 years Peter merge 0.12.2 into trunk
cigar.cc 3.4 KB 3213   9 years Peter three new cigar functions
cigar_iterator.cc 2.8 KB 3417   8 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   9 years Peter update copyright years
codon.cc 1.8 KB 3330   8 years Peter update copyright years
commandline.cc 18.2 KB 2893   10 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   10 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   10 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   7 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   10 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   9 years Peter update copyright years
data_weight.cc 1.6 KB 2919   10 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   8 years Peter update copyright years
defs.sh.in 4.1 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
deleter.cc 1.3 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
diagonal_matrix.cc 3.5 KB 3660   5 years Peter missing include
distance.cc 9.0 KB 3550   6 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   6 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.2 KB 3819   3 years Peter Remove leftover from recursive Makefile. 'test/doxygen_test.log' …
ensemble.cc 5.7 KB 2919   10 years Peter update copyright years
fasta.cc 2.6 KB 3579   6 years Peter merge release 0.14 into trunk
feature_selection.cc 3.4 KB 2919   10 years Peter update copyright years
fileutil.cc 6.6 KB 2919   10 years Peter update copyright years
fisher.cc 6.4 KB 3743   4 years Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   6 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3130   9 years Peter merge release 0.11 into trunk
gen_libmy_static.sh 1.5 KB 3130   9 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   10 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   10 years Peter update copyright years
getvector.cc 1.9 KB 3639   6 years Peter new function getvector. Combination of getline and split.
gff.cc 3.1 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
help.cc 1.2 KB 2919   10 years Peter update copyright years
help_test.sh 1.3 KB 3114   9 years Peter update copyright years
histogram.cc 2.2 KB 2919   10 years Peter update copyright years
igp.cc 1.4 KB 2919   10 years Peter update copyright years
index.cc 2.7 KB 2919   10 years Peter update copyright years
init.sh 2.5 KB 3036   9 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   10 years Peter update copyright years
interpolation.cc 3.8 KB 2919   10 years Peter update copyright years
iterator.cc 22.6 KB 3534   6 years Peter move test::weighted_iterator_archetype to …
kendall.cc 4.0 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
kernel.cc 7.3 KB 2919   10 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   10 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   9 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   10 years Peter update copyright years
knn.cc 11.2 KB 2919   10 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   10 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   9 years Peter update copyright years
likelihood_ratio_test_binomial.cc 1.4 KB 3138   9 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   10 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 13.3 KB 3827   3 years Peter refs #916. add test case when using Scheduler after calling wait().
matrix.cc 7.7 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 3.6 KB 3654   5 years Peter Basic implementation of transpose(Expression). closes #880
matrix_lookup.cc 6.3 KB 2919   10 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   10 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   10 years Peter update copyright years
merge.cc 3.3 KB 2919   10 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   8 years Peter updating copyright statements
nbc.cc 1.8 KB 2919   10 years Peter update copyright years
ncc.cc 11.4 KB 2919   10 years Peter update copyright years
negative_binomial.cc 5.0 KB 3792   4 years Peter update copyright years
nni.cc 5.9 KB 2919   10 years Peter update copyright years
normalization.cc 17.8 KB 3550   6 years Peter Update copyright years. Happy New Year
ostream_iterator.cc 1.6 KB 3152   9 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   10 years Peter update copyright years
perceptron.cc 5.3 KB 3709   5 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   8 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.9 KB 3802   4 years Peter closes #918. implement function Pileup::size
poisson.cc 4.1 KB 3662   5 years Peter close #882
print_what.cc 1.8 KB 3730   5 years Peter new function print_what() to print error message from std::nested_exception
priority_queue.cc 2.1 KB 3403   8 years Peter add constructor that takes compare functor
queue2.cc 1.9 KB 3063   9 years Peter add another test for new class Queue
queue.cc 1.7 KB 3062   9 years Peter implement copy and assignment (compiler generated does not compile …
range.cc 1.5 KB 3330   8 years Peter update copyright years
README 4.6 KB 2754   10 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.2 KB 3814   3 years Peter decrease stringency in test, to avoid spurious test failure on osx …
rnd.cc 2.2 KB 3469   7 years Peter New class for NegativeHyperGeometric?. closes #857. The implementation …
rng-mt.cc 3.6 KB 2943   10 years Peter merge release 0.10 into trunk
roc.cc 11.8 KB 3439   7 years Peter merge release 0.13 into trunk
scheduler2.cc 2.5 KB 3402   8 years Peter add interface to set priority of Scheduler::Job and make the order the …
scheduler3.cc 2.1 KB 3423   7 years Peter merge from 0.13-stable branch. Avoid compiler warnings also in trunk.
scheduler4.cc 1.9 KB 3686   5 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   3 years Peter Merge release 0.16 into trunk
scheduler6.cc 1.9 KB 3827   3 years Peter refs #916. add test case when using Scheduler after calling wait().
scheduler.cc 2.2 KB 3826   3 years Peter function to access number of threads in Scheduler. closes #914
score.cc 3.9 KB 2919   10 years Peter update copyright years
segment.cc 12.2 KB 3661   5 years Peter update copyright years
smart_ptr.cc 1.3 KB 2919   10 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   9 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   6 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   10 years Peter update copyright years
split.cc 2.4 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 12.8 KB 3792   4 years Peter update copyright years
stream_redirect.cc 3.7 KB 2919   10 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   10 years Peter update copyright years
Suite.cc 3.9 KB 3439   7 years Peter merge release 0.13 into trunk
Suite.h 21.7 KB 3792   4 years Peter update copyright years
svd.cc 3.6 KB 2919   10 years Peter update copyright years
svm.cc 4.6 KB 2919   10 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   10 years Peter update copyright years
target.cc 3.4 KB 2919   10 years Peter update copyright years
ttest.cc 1.7 KB 3114   9 years Peter update copyright years
tukey.cc 2.6 KB 3550   6 years Peter Update copyright years. Happy New Year
utility.cc 22.9 KB 3803   4 years Peter implement wrapper function around getcwd. closes #921.
vcf.cc 4.1 KB 3747   4 years Peter new class for an VCF entry; behaviour of default construction still …
vcf_compare.cc 1004 bytes 3759   4 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   4 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file.cc 2.1 KB 3774   4 years Peter implement VcfIterator?. refs #905
vcf_header.cc 1.8 KB 3750   4 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
vector.cc 13.4 KB 3623   6 years Peter merge release 0.14.1 into trunk move functions 'create_gsl_vector' …
vector_expression.cc 6.1 KB 3677   5 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   9 years Peter update copyright years
view.cc 4.3 KB 3661   5 years Peter update copyright years
weighted_iterator_archetype.cc 5.4 KB 3579   6 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   9 years Peter update copyright years
yat_config_test.sh 1.7 KB 3800   4 years Peter allow multiple arguments in yat-config. closes #911
yat_cpp_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   9 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3114   9 years Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_ld_add_flag_test.sh 1.6 KB 3114   9 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 1.9 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_ifelse_test.sh 2.4 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_la_ifelse_test.sh 1.5 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test2.sh 1.5 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test.sh 1.7 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_with_bam_test.sh 1.4 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_msg_error_test2.sh 1.2 KB 3330   8 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_pc_test.sh 3.1 KB 3661   5 years Peter update copyright years
yat_prog_move_if_change_test.sh 1.2 KB 3114   9 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
yat_svn_release_year_test.sh 1.8 KB 3114   9 years Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3792   4 years Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   8 years Peter update copyright years
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