source: trunk/yat/omic/BamPair.cc @ 3176

// $Id: BamPair.cc 3176 2014-03-15 09:10:37Z peter $

/*
  Copyright (C) 2014 Peter Johansson

  This file is part of the yat library, http://dev.thep.lu.se/yat

  The yat library is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License as
  published by the Free Software Foundation; either version 3 of the
  License, or (at your option) any later version.

  The yat library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program. If not, see <http://www.gnu.org/licenses/>.
*/

#include <config.h>

#include "BamPair.h"

#include <cassert>

namespace theplu {
namespace yat {
namespace omic {

  BamPair::BamPair(void)
  {
  }


  BamPair::BamPair(const BamRead& first, const BamRead& second)
    : first_(first), second_(second) {}


  BamRead& BamPair::first(void)
  {
    return first_;
  }


  const BamRead& BamPair::first(void) const
  {
    return first_;
  }


  BamRead& BamPair::second(void)
  {
    return second_;
  }


  const BamRead& BamPair::second(void) const
  {
    return second_;
  }

  ///////////// BamPairProxy ////////////////////

  BamPairProxy::BamPairProxy(void)
    : first_(NULL), second_(NULL) {}

  BamPairProxy::BamPairProxy(const BamRead* first, const BamRead* second)
    : first_(first), second_(second) {}

  const BamRead& BamPairProxy::first(void) const
  {
    assert(first_);
    return *first_;
  }


  const BamRead& BamPairProxy::second(void) const
  {
    assert(second_);
    return *second_;
  }


  BamPairProxy::operator BamPair() const
  {
    return BamPair(*first_, *second_);
  }

}}}