source: trunk/yat/omic/BamPair.h @ 3175

#ifndef theplu_yat_omic_bam_pair
#define theplu_yat_omic_bam_pair

// $Id: BamPair.h 3175 2014-03-15 08:15:51Z peter $

/*
  Copyright (C) 2014 Peter Johansson

  This file is part of the yat library, http://dev.thep.lu.se/yat

  The yat library is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License as
  published by the Free Software Foundation; either version 3 of the
  License, or (at your option) any later version.

  The yat library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program. If not, see <http://www.gnu.org/licenses/>.
*/

#include "BamRead.h"

namespace theplu {
namespace yat {
namespace omic {

  /**
     \since New in yat 0.12
   */
  class BamPair
  {
  public:
    /**
       \brief default constructor

       Creating a pair using default constructor of BamRead.
     */
    BamPair(void);

    /**
       \brief Copy constructor
     */
    BamPair(const BamRead& first, const BamRead& second);

    /**
       \brief access first BamRead
    */
    BamRead& first(void);

    /**
       \brief access first BamRead
    */
    const BamRead& first(void) const;

    /**
       \brief access second BamRead
    */
    BamRead& second(void);

    /**
       \brief access second BamRead
    */
    const BamRead& second(void) const;

  private:
    BamRead first_;
    BamRead second_;
  };

}}}
#endif