source: trunk/yat/omic/BamWriteIterator.cc @ 2883

// $Id: BamWriteIterator.cc 2883 2012-12-03 12:48:51Z peter $
//
// Copyright (C) 2012 Peter Johansson
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.

#include "BamWriteIterator.h"

#include "BamFile.h"

#include <sam.h>

#include <cassert>

namespace theplu {
namespace yat {
namespace omic {

  BamWriter::BamWriter(void)
    : out_(NULL)
  {}


  BamWriter::BamWriter(OutBamFile& o)
  : out_(&o)
  {}


  void BamWriter::operator()(const BamRead& b) const
  {
    assert(out_);
    out_->write(b);
  }


  BamWriteIterator::BamWriteIterator(OutBamFile& out)
    : boost::function_output_iterator<BamWriter>(BamWriter(out))
  {}

}}}