| 1 | ## $Id: Makefile.am 3317 2014-09-19 05:41:50Z peter $ |
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| 2 | |
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| 3 | # Copyright (C) 2010, 2011, 2012, 2013, 2014 Peter Johansson |
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| 4 | # |
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| 5 | # This file is part of the yat library, http://dev.thep.lu.se/yat |
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| 6 | # |
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| 7 | # The yat library is free software; you can redistribute it and/or |
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| 8 | # modify it under the terms of the GNU General Public License as |
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| 9 | # published by the Free Software Foundation; either version 3 of the |
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| 10 | # License, or (at your option) any later version. |
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| 11 | # |
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| 12 | # The yat library is distributed in the hope that it will be useful, |
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| 13 | # but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 14 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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| 15 | # General Public License for more details. |
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| 16 | # |
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| 17 | # You should have received a copy of the GNU General Public License |
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| 18 | # along with yat. If not, see <http://www.gnu.org/licenses/>. |
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| 19 | |
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| 20 | if HAVE_LIBBAM |
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| 21 | yat_libyat_la_SOURCES += yat/omic/BamFile.cc |
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| 22 | yat_libyat_la_SOURCES += yat/omic/BamHeader.cc |
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| 23 | yat_libyat_la_SOURCES += yat/omic/BamPair.cc |
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| 24 | yat_libyat_la_SOURCES += yat/omic/BamRead.cc |
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| 25 | yat_libyat_la_SOURCES += yat/omic/BamReadFilter.cc |
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| 26 | yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc |
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| 27 | yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc |
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| 28 | endif |
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| 29 | yat_libyat_la_SOURCES += yat/omic/Codon.cc |
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| 30 | yat_libyat_la_SOURCES += yat/omic/DNA.cc |
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| 31 | yat_libyat_la_SOURCES += yat/omic/GenomicPosition.cc |
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| 32 | yat_libyat_la_SOURCES += yat/omic/GFF.cc |
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| 33 | yat_libyat_la_SOURCES += yat/omic/GFF2.cc |
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| 34 | yat_libyat_la_SOURCES += yat/omic/GFF3.cc |
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| 35 | |
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| 36 | nobase_include_HEADERS += $(srcdir)/yat/omic/algorithm.h |
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| 37 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamFile.h |
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| 38 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h |
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| 39 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamPair.h |
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| 40 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator.h |
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| 41 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamRead.h |
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| 42 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadFilter.h |
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| 43 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h |
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| 44 | nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h |
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| 45 | nobase_include_HEADERS += $(srcdir)/yat/omic/config_bam.h |
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| 46 | nobase_include_HEADERS += $(srcdir)/yat/omic/Codon.h |
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| 47 | nobase_include_HEADERS += $(srcdir)/yat/omic/DNA.h |
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| 48 | nobase_include_HEADERS += $(srcdir)/yat/omic/GenomicPosition.h |
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| 49 | nobase_include_HEADERS += $(srcdir)/yat/omic/GFF.h |
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| 50 | nobase_include_HEADERS += $(srcdir)/yat/omic/GFF2.h |
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| 51 | nobase_include_HEADERS += $(srcdir)/yat/omic/GFF3.h |
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| 52 | nobase_include_HEADERS += $(srcdir)/yat/omic/Pileup.h |
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