source: trunk/yat/omic/Makefile.am @ 3999

Last change on this file since 3999 was 3999, checked in by Peter, 12 months ago

update copyright years

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
File size: 3.2 KB
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1## $Id: Makefile.am 3999 2020-10-08 23:22:32Z peter $
2
3# Copyright (C) 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2018, 2020 Peter Johansson
4#
5# This file is part of the yat library, http://dev.thep.lu.se/yat
6#
7# The yat library is free software; you can redistribute it and/or
8# modify it under the terms of the GNU General Public License as
9# published by the Free Software Foundation; either version 3 of the
10# License, or (at your option) any later version.
11#
12# The yat library is distributed in the hope that it will be useful,
13# but WITHOUT ANY WARRANTY; without even the implied warranty of
14# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
15# General Public License for more details.
16#
17# You should have received a copy of the GNU General Public License
18# along with yat. If not, see <http://www.gnu.org/licenses/>.
19
20if HAVE_HTSLIB
21yat_libyat_la_SOURCES += yat/omic/BamFile.cc
22yat_libyat_la_SOURCES += yat/omic/BamHeader.cc
23yat_libyat_la_SOURCES += yat/omic/BamPair.cc
24yat_libyat_la_SOURCES += yat/omic/BamRead.cc
25yat_libyat_la_SOURCES += yat/omic/BamReadFilter.cc
26yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc
27yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc
28yat_libyat_la_SOURCES += yat/omic/Fasta.cc
29endif
30yat_libyat_la_SOURCES += yat/omic/Codon.cc
31yat_libyat_la_SOURCES += yat/omic/DNA.cc
32yat_libyat_la_SOURCES += yat/omic/DnaComplementer.cc
33yat_libyat_la_SOURCES += yat/omic/GenomicPosition.cc
34yat_libyat_la_SOURCES += yat/omic/GFF.cc
35yat_libyat_la_SOURCES += yat/omic/GFF2.cc
36yat_libyat_la_SOURCES += yat/omic/GFF3.cc
37yat_libyat_la_SOURCES += yat/omic/phred.cc
38yat_libyat_la_SOURCES += yat/omic/VCF.cc
39yat_libyat_la_SOURCES += yat/omic/VcfCompare.cc
40yat_libyat_la_SOURCES += yat/omic/VcfFile.cc
41yat_libyat_la_SOURCES += yat/omic/VcfHeader.cc
42yat_libyat_la_SOURCES += yat/omic/VcfIterator.cc
43
44nobase_include_HEADERS += $(srcdir)/yat/omic/algorithm.h
45nobase_include_HEADERS += $(srcdir)/yat/omic/BamFile.h
46nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h
47nobase_include_HEADERS += $(srcdir)/yat/omic/BamPair.h
48nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator.h
49nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator2.h
50nobase_include_HEADERS += $(srcdir)/yat/omic/BamRead.h
51nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadFilter.h
52nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h
53nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h
54nobase_include_HEADERS += $(srcdir)/yat/omic/config_bam.h
55nobase_include_HEADERS += $(srcdir)/yat/omic/Codon.h
56nobase_include_HEADERS += $(srcdir)/yat/omic/DNA.h
57nobase_include_HEADERS += $(srcdir)/yat/omic/DnaComplementer.h
58nobase_include_HEADERS += $(srcdir)/yat/omic/Fasta.h
59nobase_include_HEADERS += $(srcdir)/yat/omic/GenomicPosition.h
60nobase_include_HEADERS += $(srcdir)/yat/omic/GFF.h
61nobase_include_HEADERS += $(srcdir)/yat/omic/GFF2.h
62nobase_include_HEADERS += $(srcdir)/yat/omic/GFF3.h
63nobase_include_HEADERS += $(srcdir)/yat/omic/Pileup.h
64nobase_include_HEADERS += $(srcdir)/yat/omic/phred.h
65nobase_include_HEADERS += $(srcdir)/yat/omic/VCF.h
66nobase_include_HEADERS += $(srcdir)/yat/omic/VcfCompare.h
67nobase_include_HEADERS += $(srcdir)/yat/omic/VcfFile.h
68nobase_include_HEADERS += $(srcdir)/yat/omic/VcfHeader.h
69nobase_include_HEADERS += $(srcdir)/yat/omic/VcfIterator.h
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