source: trunk/yat/omic

Name Size Rev Age Author Last Change
../
algorithm.h 6.5 KB 3999   14 months Peter update copyright years
BamFile.cc 5.1 KB 3999   14 months Peter update copyright years
BamFile.h 8.8 KB 3999   14 months Peter update copyright years
BamHeader.cc 6.4 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
BamHeader.h 6.1 KB 3999   14 months Peter update copyright years
BamPair.cc 1.8 KB 4089   3 months Peter updating copyright years
BamPair.h 2.7 KB 4089   3 months Peter updating copyright years
BamPairBuffer.h 2.2 KB 4057   8 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
BamPairIterator2.h 7.4 KB 4057   8 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
BamPairIterator.h 7.0 KB 4089   3 months Peter updating copyright years
BamRead.cc 10.6 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
BamRead.h 13.0 KB 3999   14 months Peter update copyright years
BamReadFilter.cc 1.2 KB 3792   3 years Peter update copyright years
BamReadFilter.h 2.3 KB 3999   14 months Peter update copyright years
BamReadIterator.cc 3.0 KB 4089   3 months Peter updating copyright years
BamReadIterator.h 4.4 KB 4011   14 months Peter Use std smart pointers instead of boost. Prefer initialisation of …
BamWriteIterator.cc 1.3 KB 3999   14 months Peter update copyright years
BamWriteIterator.h 2.4 KB 3792   3 years Peter update copyright years
Codon.cc 5.4 KB 4089   3 months Peter updating copyright years
Codon.h 4.0 KB 3487   6 years Peter add function amino_acid_long
config_bam.h 1.9 KB 3999   14 months Peter update copyright years
DNA.cc 3.1 KB 4089   3 months Peter updating copyright years
DNA.h 4.3 KB 3550   5 years Peter Update copyright years. Happy New Year
DnaComplementer.cc 1.4 KB 4089   3 months Peter updating copyright years
DnaComplementer.h 1.2 KB 3792   3 years Peter update copyright years
Fasta.cc 4.5 KB 4089   3 months Peter updating copyright years
Fasta.h 4.0 KB 4019   13 months Peter merge 0.18 into trunk
GenomicPosition.cc 2.3 KB 3999   14 months Peter update copyright years
GenomicPosition.h 3.7 KB 3999   14 months Peter update copyright years
GFF2.cc 1.5 KB 3875   21 months Peter merge release 0.17 into trunk
GFF2.h 1.1 KB 3114   8 years Peter update copyright years
GFF3.cc 1.2 KB 3875   21 months Peter merge release 0.17 into trunk
GFF3.h 1.1 KB 3114   8 years Peter update copyright years
GFF.cc 3.7 KB 3875   21 months Peter merge release 0.17 into trunk
GFF.h 3.3 KB 3114   8 years Peter update copyright years
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 3.3 KB 4089   3 months Peter updating copyright years
phred.cc 984 bytes 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
phred.h 1.2 KB 3326   7 years Peter use same variable name (p) in docs as in argument list
Pileup.h 10.0 KB 4019   13 months Peter merge 0.18 into trunk
VCF.cc 11.5 KB 3999   14 months Peter update copyright years
VCF.h 13.9 KB 4021   12 months Peter closes #961. Improve message in thrown exceptions.
VcfCompare.cc 1.9 KB 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
VcfCompare.h 1.7 KB 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
VcfFile.cc 2.9 KB 4089   3 months Peter updating copyright years
VcfFile.h 2.8 KB 4113   2 months Peter fix docs typo
VcfHeader.cc 7.7 KB 4041   10 months Peter avoid constructing temporary substring just for comparison
VcfHeader.h 5.0 KB 3999   14 months Peter update copyright years
VcfIterator.cc 992 bytes 3774   3 years Peter implement VcfIterator?. refs #905
VcfIterator.h 1.8 KB 3774   3 years Peter implement VcfIterator?. refs #905
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