source: trunk/yat/omic @ 2919

Name Size Rev Age Author Last Change
../
Makefile.am 2.0 KB 2899   10 years Peter function bam_pair_analyse
Makefile 786 bytes 2824   10 years Peter remove intermediate libraries. Makefiles in corresponding …
GFF.h 3.3 KB 2576   11 years Peter avoid warning with doxygen 1.7.5.1
GFF.cc 3.6 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF3.h 1.1 KB 2482   11 years Peter new class GFF. closes #647
GFF3.cc 1.1 KB 2919   10 years Peter update copyright years
GFF2.h 1.1 KB 2919   10 years Peter update copyright years
GFF2.cc 1.2 KB 2919   10 years Peter update copyright years
GenomicPosition.h 3.3 KB 2919   10 years Peter update copyright years
GenomicPosition.cc 2.1 KB 2919   10 years Peter update copyright years
DNA.h 4.3 KB 2743   10 years Peter correct doc typo
DNA.cc 2.8 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Codon.h 3.8 KB 2919   10 years Peter update copyright years
Codon.cc 3.9 KB 2919   10 years Peter update copyright years
BamWriteIterator.h 2.3 KB 2910   10 years Peter improve docs. closes #729
BamWriteIterator.cc 1.1 KB 2883   10 years Peter New classes to wrap around functionality provided by samtools. refs #729
BamReadIterator.h 3.8 KB 2896   10 years Peter improve doc and remove private classes from docs
BamReadIterator.cc 2.6 KB 2897   10 years Peter prefer throwing yat::utility::runtime_error. refs #729
BamRead.h 6.2 KB 2911   10 years Peter accidently included in r2910
BamRead.cc 5.2 KB 2886   10 years Peter fast swap for BamRead?
BamHeader.h 1.5 KB 2884   10 years Peter add missing since tags. refs #729
BamHeader.cc 1.1 KB 2883   10 years Peter New classes to wrap around functionality provided by samtools. refs #729
BamFile.h 4.7 KB 2897   10 years Peter prefer throwing yat::utility::runtime_error. refs #729
BamFile.cc 2.7 KB 2897   10 years Peter prefer throwing yat::utility::runtime_error. refs #729
algorithm.h 3.5 KB 2905   10 years Peter remove superfluous 'using'
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