source: trunk/yat/omic @ 3029

Name Size Rev Age Author Last Change
../
algorithm.h 3.5 KB 2993   10 years Peter conform GPL header to same style as in other yat files
BamFile.cc 3.0 KB 2993   10 years Peter conform GPL header to same style as in other yat files
BamFile.h 4.8 KB 2993   10 years Peter conform GPL header to same style as in other yat files
BamHeader.cc 2.3 KB 2999   10 years Peter closes #739. Two new functions in BamHeader?: tid(string) and parse_region.
BamHeader.h 2.3 KB 2999   10 years Peter closes #739. Two new functions in BamHeader?: tid(string) and parse_region.
BamRead.cc 6.7 KB 3029   10 years Peter refs #746. Add docs and throw in aux_del if tag is absent (rather than …
BamRead.h 8.2 KB 3029   10 years Peter refs #746. Add docs and throw in aux_del if tag is absent (rather than …
BamReadFilter.cc 1.2 KB 2994   10 years Peter new class BamReadFilter?. closes #738
BamReadFilter.h 2.1 KB 2994   10 years Peter new class BamReadFilter?. closes #738
BamReadIterator.cc 2.7 KB 2993   10 years Peter conform GPL header to same style as in other yat files
BamReadIterator.h 3.9 KB 3018   10 years Peter merge patch release 0.10.2 into trunk
BamWriteIterator.cc 1.2 KB 2993   10 years Peter conform GPL header to same style as in other yat files
BamWriteIterator.h 2.4 KB 2993   10 years Peter conform GPL header to same style as in other yat files
Codon.cc 3.9 KB 2919   10 years Peter update copyright years
Codon.h 3.8 KB 2993   10 years Peter conform GPL header to same style as in other yat files
config_bam.h 1.9 KB 2990   10 years Peter always install bam headers, but #error out noisily if included when …
DNA.cc 2.8 KB 2881   11 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
DNA.h 4.3 KB 2993   10 years Peter conform GPL header to same style as in other yat files
GenomicPosition.cc 2.1 KB 2919   10 years Peter update copyright years
GenomicPosition.h 3.3 KB 2993   10 years Peter conform GPL header to same style as in other yat files
GFF2.cc 1.2 KB 2919   10 years Peter update copyright years
GFF2.h 1.1 KB 2993   10 years Peter conform GPL header to same style as in other yat files
GFF3.cc 1.1 KB 2919   10 years Peter update copyright years
GFF3.h 1.1 KB 2993   10 years Peter conform GPL header to same style as in other yat files
GFF.cc 3.6 KB 2881   11 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF.h 3.3 KB 2993   10 years Peter conform GPL header to same style as in other yat files
Makefile 786 bytes 2824   11 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 2.1 KB 2994   10 years Peter new class BamReadFilter?. closes #738
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