source: trunk/yat/omic @ 3166

Name Size Rev Age Author Last Change
../
algorithm.h 3.5 KB 3114   8 years Peter update copyright years
BamFile.cc 3.8 KB 3166   8 years Peter throw OutBamFile::error when OutBamFile::write fails. closes #778
BamFile.h 6.2 KB 3166   8 years Peter throw OutBamFile::error when OutBamFile::write fails. closes #778
BamHeader.cc 2.3 KB 3144   8 years Peter merge patch release 0.11.1 into trunk
BamHeader.h 2.3 KB 2999   9 years Peter closes #739. Two new functions in BamHeader?: tid(string) and parse_region.
BamRead.cc 8.0 KB 3055   8 years Peter closes #746. New function BamRead::name(1)
BamRead.h 8.5 KB 3055   8 years Peter closes #746. New function BamRead::name(1)
BamReadFilter.cc 1.2 KB 2994   9 years Peter new class BamReadFilter?. closes #738
BamReadFilter.h 2.2 KB 3081   8 years Peter make BamReadFilter? an adaptable functor by inheriting from …
BamReadIterator.cc 2.9 KB 3056   8 years Peter fixes #764: throw if region in BamReadIterator? is invalid
BamReadIterator.h 3.9 KB 3018   8 years Peter merge patch release 0.10.2 into trunk
BamWriteIterator.cc 1.2 KB 3114   8 years Peter update copyright years
BamWriteIterator.h 2.4 KB 3147   8 years Peter add missing public
Codon.cc 3.9 KB 2919   9 years Peter update copyright years
Codon.h 3.8 KB 3114   8 years Peter update copyright years
config_bam.h 1.9 KB 3068   8 years Peter Fixes #766 Replace #defines HAVE_BAM_H (and friends) in …
DNA.cc 2.8 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
DNA.h 4.3 KB 3114   8 years Peter update copyright years
GenomicPosition.cc 2.1 KB 2919   9 years Peter update copyright years
GenomicPosition.h 3.3 KB 3114   8 years Peter update copyright years
GFF2.cc 1.2 KB 2919   9 years Peter update copyright years
GFF2.h 1.1 KB 3114   8 years Peter update copyright years
GFF3.cc 1.1 KB 2919   9 years Peter update copyright years
GFF3.h 1.1 KB 3114   8 years Peter update copyright years
GFF.cc 3.6 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF.h 3.3 KB 3114   8 years Peter update copyright years
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 2.1 KB 2994   9 years Peter new class BamReadFilter?. closes #738
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