source: trunk/yat/omic @ 3332

Name Size Rev Age Author Last Change
../
algorithm.h 1.9 KB 3295   9 years Peter merge release 0.12 into trunk
BamFile.cc 3.8 KB 3166   9 years Peter throw OutBamFile::error when OutBamFile::write fails. closes #778
BamFile.h 6.2 KB 3166   9 years Peter throw OutBamFile::error when OutBamFile::write fails. closes #778
BamHeader.cc 2.3 KB 3144   9 years Peter merge patch release 0.11.1 into trunk
BamHeader.h 2.6 KB 3188   9 years Peter merge patch release 0.11.2
BamPair.cc 1.7 KB 3176   9 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
BamPair.h 2.6 KB 3176   9 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
BamPairIterator.h 6.9 KB 3295   9 years Peter merge release 0.12 into trunk
BamRead.cc 9.1 KB 3324   8 years Peter grammar in comment
BamRead.h 7.9 KB 3306   8 years Peter merge ptach release 0.12.1 into trunk
BamReadFilter.cc 1.2 KB 2994   10 years Peter new class BamReadFilter?. closes #738
BamReadFilter.h 2.2 KB 3081   9 years Peter make BamReadFilter? an adaptable functor by inheriting from …
BamReadIterator.cc 2.9 KB 3056   10 years Peter fixes #764: throw if region in BamReadIterator? is invalid
BamReadIterator.h 3.9 KB 3018   10 years Peter merge patch release 0.10.2 into trunk
BamWriteIterator.cc 1.2 KB 3114   9 years Peter update copyright years
BamWriteIterator.h 2.4 KB 3147   9 years Peter add missing public
CigarIterator.cc 1.6 KB 3332   8 years Peter In Pileup store reads in a std::list (rather than std::deque) to allow …
CigarIterator.h 2.5 KB 3332   8 years Peter In Pileup store reads in a std::list (rather than std::deque) to allow …
Codon.cc 4.7 KB 3330   8 years Peter update copyright years
Codon.h 3.8 KB 3114   9 years Peter update copyright years
config_bam.h 1.9 KB 3068   10 years Peter Fixes #766 Replace #defines HAVE_BAM_H (and friends) in …
DNA.cc 2.8 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
DNA.h 4.3 KB 3114   9 years Peter update copyright years
GenomicPosition.cc 2.1 KB 2919   10 years Peter update copyright years
GenomicPosition.h 3.3 KB 3114   9 years Peter update copyright years
GFF2.cc 1.2 KB 2919   10 years Peter update copyright years
GFF2.h 1.1 KB 3114   9 years Peter update copyright years
GFF3.cc 1.1 KB 2919   10 years Peter update copyright years
GFF3.h 1.1 KB 3114   9 years Peter update copyright years
GFF.cc 3.6 KB 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF.h 3.3 KB 3114   9 years Peter update copyright years
Makefile 786 bytes 2824   10 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 2.5 KB 3329   8 years Peter new class CigarIterator? that can be used to (surprise) iterate over a …
phred.cc 984 bytes 3325   8 years Peter new functions phred and phred_inv that calculate phred scaled …
phred.h 1.2 KB 3326   8 years Peter use same variable name (p) in docs as in argument list
Pileup.h 7.4 KB 3332   8 years Peter In Pileup store reads in a std::list (rather than std::deque) to allow …
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