source: trunk/yat/omic @ 3752

Name Size Rev Age Author Last Change
../
algorithm.h 6.5 KB 3628   5 years Peter merge release 0.14.2 into trunk
BamFile.cc 7.7 KB 3752   3 years Peter adjust license text to be same as in other files
BamFile.h 9.0 KB 3752   3 years Peter adjust license text to be same as in other files
BamHeader.cc 8.5 KB 3752   3 years Peter adjust license text to be same as in other files
BamHeader.h 6.3 KB 3752   3 years Peter adjust license text to be same as in other files
BamPair.cc 1.7 KB 3752   3 years Peter adjust license text to be same as in other files
BamPair.h 2.6 KB 3752   3 years Peter adjust license text to be same as in other files
BamPairIterator.h 7.0 KB 3752   3 years Peter adjust license text to be same as in other files
BamRead.cc 11.6 KB 3752   3 years Peter adjust license text to be same as in other files
BamRead.h 12.9 KB 3752   3 years Peter adjust license text to be same as in other files
BamReadFilter.cc 1.2 KB 3752   3 years Peter adjust license text to be same as in other files
BamReadFilter.h 2.3 KB 3752   3 years Peter adjust license text to be same as in other files
BamReadIterator.cc 3.2 KB 3752   3 years Peter adjust license text to be same as in other files
BamReadIterator.h 4.6 KB 3752   3 years Peter adjust license text to be same as in other files
BamWriteIterator.cc 1.3 KB 3752   3 years Peter adjust license text to be same as in other files
BamWriteIterator.h 2.4 KB 3752   3 years Peter adjust license text to be same as in other files
Codon.cc 5.3 KB 3516   5 years Peter fix recent typo in Codon::amino_acid_long
Codon.h 4.0 KB 3487   6 years Peter add function amino_acid_long
config_bam.h 2.2 KB 3550   5 years Peter Update copyright years. Happy New Year
DNA.cc 3.0 KB 3550   5 years Peter Update copyright years. Happy New Year
DNA.h 4.3 KB 3550   5 years Peter Update copyright years. Happy New Year
DnaComplementer.cc 1.4 KB 3475   6 years Peter closes #859 New class handling Fasta files that have an index file …
DnaComplementer.h 1.2 KB 3704   4 years Peter update copyright years
Fasta.cc 5.9 KB 3727   4 years Peter add output operator for Fasta::Sequence
Fasta.h 4.2 KB 3727   4 years Peter add output operator for Fasta::Sequence
GenomicPosition.cc 2.1 KB 2919   9 years Peter update copyright years
GenomicPosition.h 3.3 KB 3114   8 years Peter update copyright years
GFF2.cc 1.2 KB 2919   9 years Peter update copyright years
GFF2.h 1.1 KB 3114   8 years Peter update copyright years
GFF3.cc 1.1 KB 2919   9 years Peter update copyright years
GFF3.h 1.1 KB 3114   8 years Peter update copyright years
GFF.cc 3.6 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF.h 3.3 KB 3114   8 years Peter update copyright years
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 2.8 KB 3750   3 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
phred.cc 984 bytes 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
phred.h 1.2 KB 3326   7 years Peter use same variable name (p) in docs as in argument list
Pileup.h 8.8 KB 3661   4 years Peter update copyright years
VCF.cc 10.8 KB 3747   3 years Peter new class for an VCF entry; behaviour of default construction still …
VCF.h 12.1 KB 3747   3 years Peter new class for an VCF entry; behaviour of default construction still …
VcfHeader.cc 7.2 KB 3750   3 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
VcfHeader.h 4.1 KB 3750   3 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
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