source: trunk/yat/omic @ 4025

Name Size Rev Age Author Last Change
../
algorithm.h 6.5 KB 3999   13 months Peter update copyright years
BamFile.cc 5.1 KB 3999   13 months Peter update copyright years
BamFile.h 8.8 KB 3999   13 months Peter update copyright years
BamHeader.cc 6.4 KB 3938   15 months Peter let configure fail if compiler is not a C++11 compiler. …
BamHeader.h 6.1 KB 3999   13 months Peter update copyright years
BamPair.cc 1.8 KB 4025   9 months Peter add move constructor for BamPair?
BamPair.h 2.7 KB 4025   9 months Peter add move constructor for BamPair?
BamPairIterator2.h 7.4 KB 4019   12 months Peter merge 0.18 into trunk
BamPairIterator.h 7.0 KB 4019   12 months Peter merge 0.18 into trunk
BamRead.cc 10.6 KB 3938   15 months Peter let configure fail if compiler is not a C++11 compiler. …
BamRead.h 13.0 KB 3999   13 months Peter update copyright years
BamReadFilter.cc 1.2 KB 3792   3 years Peter update copyright years
BamReadFilter.h 2.3 KB 3999   13 months Peter update copyright years
BamReadIterator.cc 3.0 KB 4011   12 months Peter Use std smart pointers instead of boost. Prefer initialisation of …
BamReadIterator.h 4.4 KB 4011   12 months Peter Use std smart pointers instead of boost. Prefer initialisation of …
BamWriteIterator.cc 1.3 KB 3999   13 months Peter update copyright years
BamWriteIterator.h 2.4 KB 3792   3 years Peter update copyright years
Codon.cc 5.3 KB 3516   5 years Peter fix recent typo in Codon::amino_acid_long
Codon.h 4.0 KB 3487   6 years Peter add function amino_acid_long
config_bam.h 1.9 KB 3999   13 months Peter update copyright years
DNA.cc 3.0 KB 3550   5 years Peter Update copyright years. Happy New Year
DNA.h 4.3 KB 3550   5 years Peter Update copyright years. Happy New Year
DnaComplementer.cc 1.4 KB 3792   3 years Peter update copyright years
DnaComplementer.h 1.2 KB 3792   3 years Peter update copyright years
Fasta.cc 4.5 KB 4019   12 months Peter merge 0.18 into trunk
Fasta.h 4.0 KB 4019   12 months Peter merge 0.18 into trunk
GenomicPosition.cc 2.3 KB 3999   13 months Peter update copyright years
GenomicPosition.h 3.7 KB 3999   13 months Peter update copyright years
GFF2.cc 1.5 KB 3875   20 months Peter merge release 0.17 into trunk
GFF2.h 1.1 KB 3114   8 years Peter update copyright years
GFF3.cc 1.2 KB 3875   20 months Peter merge release 0.17 into trunk
GFF3.h 1.1 KB 3114   8 years Peter update copyright years
GFF.cc 3.7 KB 3875   20 months Peter merge release 0.17 into trunk
GFF.h 3.3 KB 3114   8 years Peter update copyright years
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 3.2 KB 3999   13 months Peter update copyright years
phred.cc 984 bytes 3325   7 years Peter new functions phred and phred_inv that calculate phred scaled …
phred.h 1.2 KB 3326   7 years Peter use same variable name (p) in docs as in argument list
Pileup.h 10.0 KB 4019   12 months Peter merge 0.18 into trunk
VCF.cc 11.5 KB 3999   13 months Peter update copyright years
VCF.h 13.9 KB 4021   11 months Peter closes #961. Improve message in thrown exceptions.
VcfCompare.cc 1.9 KB 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
VcfCompare.h 1.7 KB 3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
VcfFile.cc 2.9 KB 3792   3 years Peter update copyright years
VcfFile.h 2.8 KB 3999   13 months Peter update copyright years
VcfHeader.cc 7.6 KB 3891   19 months Peter fixes #933
VcfHeader.h 5.0 KB 3999   13 months Peter update copyright years
VcfIterator.cc 992 bytes 3774   3 years Peter implement VcfIterator?. refs #905
VcfIterator.h 1.8 KB 3774   3 years Peter implement VcfIterator?. refs #905
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