source: trunk/yat/omic @ 4117

Name Size Rev Age Author Last Change
../
Makefile 786 bytes 2824   10 years Peter remove intermediate libraries. Makefiles in corresponding …
phred.cc 984 bytes 3325   8 years Peter new functions phred and phred_inv that calculate phred scaled …
VcfIterator.cc 992 bytes 3774   4 years Peter implement VcfIterator?. refs #905
GFF2.h 1.1 KB 3114   9 years Peter update copyright years
GFF3.h 1.1 KB 3114   9 years Peter update copyright years
GFF3.cc 1.2 KB 3875   2 years Peter merge release 0.17 into trunk
DnaComplementer.h 1.2 KB 3792   3 years Peter update copyright years
phred.h 1.2 KB 3326   8 years Peter use same variable name (p) in docs as in argument list
BamReadFilter.cc 1.2 KB 3792   3 years Peter update copyright years
BamWriteIterator.cc 1.3 KB 3999   20 months Peter update copyright years
DnaComplementer.cc 1.4 KB 4089   8 months Peter updating copyright years
GFF2.cc 1.5 KB 3875   2 years Peter merge release 0.17 into trunk
VcfCompare.h 1.7 KB 3759   4 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
VcfIterator.h 1.8 KB 3774   4 years Peter implement VcfIterator?. refs #905
BamPair.cc 1.8 KB 4089   8 months Peter updating copyright years
VcfCompare.cc 1.9 KB 3759   4 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
config_bam.h 1.9 KB 3999   20 months Peter update copyright years
BamPairBuffer.h 2.2 KB 4057   14 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
GenomicPosition.cc 2.3 KB 3999   20 months Peter update copyright years
BamReadFilter.h 2.3 KB 3999   20 months Peter update copyright years
BamWriteIterator.h 2.4 KB 3792   3 years Peter update copyright years
BamPair.h 2.7 KB 4089   8 months Peter updating copyright years
VcfFile.h 2.8 KB 4113   8 months Peter fix docs typo
VcfFile.cc 2.9 KB 4089   8 months Peter updating copyright years
BamReadIterator.cc 3.0 KB 4089   8 months Peter updating copyright years
DNA.cc 3.1 KB 4089   8 months Peter updating copyright years
Makefile.am 3.3 KB 4089   8 months Peter updating copyright years
GFF.h 3.3 KB 3114   9 years Peter update copyright years
GFF.cc 3.7 KB 3875   2 years Peter merge release 0.17 into trunk
GenomicPosition.h 3.7 KB 3999   20 months Peter update copyright years
Codon.h 4.0 KB 3487   6 years Peter add function amino_acid_long
Fasta.h 4.0 KB 4019   19 months Peter merge 0.18 into trunk
DNA.h 4.3 KB 3550   5 years Peter Update copyright years. Happy New Year
BamReadIterator.h 4.4 KB 4011   19 months Peter Use std smart pointers instead of boost. Prefer initialisation of …
Fasta.cc 4.5 KB 4089   8 months Peter updating copyright years
VcfHeader.h 5.0 KB 3999   20 months Peter update copyright years
BamFile.cc 5.1 KB 3999   20 months Peter update copyright years
Codon.cc 5.4 KB 4089   8 months Peter updating copyright years
BamHeader.h 6.1 KB 3999   20 months Peter update copyright years
BamHeader.cc 6.4 KB 3938   22 months Peter let configure fail if compiler is not a C++11 compiler. …
algorithm.h 6.5 KB 3999   20 months Peter update copyright years
BamPairIterator.h 7.0 KB 4089   8 months Peter updating copyright years
BamPairIterator2.h 7.4 KB 4057   14 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
VcfHeader.cc 7.7 KB 4041   15 months Peter avoid constructing temporary substring just for comparison
BamFile.h 8.8 KB 3999   20 months Peter update copyright years
Pileup.h 10.0 KB 4019   19 months Peter merge 0.18 into trunk
BamRead.cc 10.6 KB 3938   22 months Peter let configure fail if compiler is not a C++11 compiler. …
VCF.cc 11.5 KB 3999   20 months Peter update copyright years
BamRead.h 13.0 KB 3999   20 months Peter update copyright years
VCF.h 13.9 KB 4021   18 months Peter closes #961. Improve message in thrown exceptions.
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