source:
trunk/yat/omic
@
4117
| Name | Size | Rev | Age | Author | Last Change |
|---|---|---|---|---|---|
| ../ | |||||
| Makefile | 786 bytes | 2824 | 10 years | remove intermediate libraries. Makefiles in corresponding … | |
| phred.cc | 984 bytes | 3325 | 8 years | new functions phred and phred_inv that calculate phred scaled … | |
| VcfIterator.cc | 992 bytes | 3774 | 4 years | implement VcfIterator?. refs #905 | |
| GFF2.h | 1.1 KB | 3114 | 9 years | update copyright years | |
| GFF3.h | 1.1 KB | 3114 | 9 years | update copyright years | |
| GFF3.cc | 1.2 KB | 3875 | 2 years | merge release 0.17 into trunk | |
| DnaComplementer.h | 1.2 KB | 3792 | 3 years | update copyright years | |
| phred.h | 1.2 KB | 3326 | 8 years | use same variable name (p) in docs as in argument list | |
| BamReadFilter.cc | 1.2 KB | 3792 | 3 years | update copyright years | |
| BamWriteIterator.cc | 1.3 KB | 3999 | 20 months | update copyright years | |
| DnaComplementer.cc | 1.4 KB | 4089 | 8 months | updating copyright years | |
| GFF2.cc | 1.5 KB | 3875 | 2 years | merge release 0.17 into trunk | |
| VcfCompare.h | 1.7 KB | 3759 | 4 years | refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. … | |
| VcfIterator.h | 1.8 KB | 3774 | 4 years | implement VcfIterator?. refs #905 | |
| BamPair.cc | 1.8 KB | 4089 | 8 months | updating copyright years | |
| VcfCompare.cc | 1.9 KB | 3759 | 4 years | refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. … | |
| config_bam.h | 1.9 KB | 3999 | 20 months | update copyright years | |
| BamPairBuffer.h | 2.2 KB | 4057 | 14 months | closes #798; new classes BamPairBuffer? and a more general SortedBuffer?. | |
| GenomicPosition.cc | 2.3 KB | 3999 | 20 months | update copyright years | |
| BamReadFilter.h | 2.3 KB | 3999 | 20 months | update copyright years | |
| BamWriteIterator.h | 2.4 KB | 3792 | 3 years | update copyright years | |
| BamPair.h | 2.7 KB | 4089 | 8 months | updating copyright years | |
| VcfFile.h | 2.8 KB | 4113 | 8 months | fix docs typo | |
| VcfFile.cc | 2.9 KB | 4089 | 8 months | updating copyright years | |
| BamReadIterator.cc | 3.0 KB | 4089 | 8 months | updating copyright years | |
| DNA.cc | 3.1 KB | 4089 | 8 months | updating copyright years | |
| Makefile.am | 3.3 KB | 4089 | 8 months | updating copyright years | |
| GFF.h | 3.3 KB | 3114 | 9 years | update copyright years | |
| GFF.cc | 3.7 KB | 3875 | 2 years | merge release 0.17 into trunk | |
| GenomicPosition.h | 3.7 KB | 3999 | 20 months | update copyright years | |
| Codon.h | 4.0 KB | 3487 | 6 years | add function amino_acid_long | |
| Fasta.h | 4.0 KB | 4019 | 19 months | merge 0.18 into trunk | |
| DNA.h | 4.3 KB | 3550 | 5 years | Update copyright years. Happy New Year | |
| BamReadIterator.h | 4.4 KB | 4011 | 19 months | Use std smart pointers instead of boost. Prefer initialisation of … | |
| Fasta.cc | 4.5 KB | 4089 | 8 months | updating copyright years | |
| VcfHeader.h | 5.0 KB | 3999 | 20 months | update copyright years | |
| BamFile.cc | 5.1 KB | 3999 | 20 months | update copyright years | |
| Codon.cc | 5.4 KB | 4089 | 8 months | updating copyright years | |
| BamHeader.h | 6.1 KB | 3999 | 20 months | update copyright years | |
| BamHeader.cc | 6.4 KB | 3938 | 22 months | let configure fail if compiler is not a C++11 compiler. … | |
| algorithm.h | 6.5 KB | 3999 | 20 months | update copyright years | |
| BamPairIterator.h | 7.0 KB | 4089 | 8 months | updating copyright years | |
| BamPairIterator2.h | 7.4 KB | 4057 | 14 months | closes #798; new classes BamPairBuffer? and a more general SortedBuffer?. | |
| VcfHeader.cc | 7.7 KB | 4041 | 15 months | avoid constructing temporary substring just for comparison | |
| BamFile.h | 8.8 KB | 3999 | 20 months | update copyright years | |
| Pileup.h | 10.0 KB | 4019 | 19 months | merge 0.18 into trunk | |
| BamRead.cc | 10.6 KB | 3938 | 22 months | let configure fail if compiler is not a C++11 compiler. … | |
| VCF.cc | 11.5 KB | 3999 | 20 months | update copyright years | |
| BamRead.h | 13.0 KB | 3999 | 20 months | update copyright years | |
| VCF.h | 13.9 KB | 4021 | 18 months | closes #961. Improve message in thrown exceptions. | |
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