1 | #ifndef _theplu_yat_statistics_foldchange_ |
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2 | #define _theplu_yat_statistics_foldchange_ |
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3 | |
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4 | // $Id: FoldChange.h 1797 2009-02-12 18:07:10Z peter $ |
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5 | |
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6 | /* |
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7 | Copyright (C) 2005 Peter Johansson |
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8 | Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson |
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9 | |
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10 | This file is part of the yat library, http://dev.thep.lu.se/yat |
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11 | |
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12 | The yat library is free software; you can redistribute it and/or |
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13 | modify it under the terms of the GNU General Public License as |
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14 | published by the Free Software Foundation; either version 3 of the |
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15 | License, or (at your option) any later version. |
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16 | |
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17 | The yat library is distributed in the hope that it will be useful, |
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18 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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20 | General Public License for more details. |
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21 | |
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22 | You should have received a copy of the GNU General Public License |
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23 | along with yat. If not, see <http://www.gnu.org/licenses/>. |
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24 | */ |
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25 | |
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26 | #include "Score.h" |
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27 | |
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28 | namespace theplu { |
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29 | namespace yat { |
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30 | class utility::VectorBase; |
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31 | namespace statistics { |
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32 | |
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33 | /// |
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34 | /// @brief Score given by the difference by the group means. |
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35 | /// |
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36 | class FoldChange : public Score |
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37 | { |
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38 | public: |
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39 | |
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40 | /// |
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41 | /// @brief Default Constructor |
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42 | /// |
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43 | FoldChange(bool absolute=true); |
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44 | |
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45 | /// |
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46 | /// @return difference of the means of the two classes |
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47 | /// |
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48 | /// @param target |
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49 | /// @param value vector of the values |
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50 | /// |
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51 | double score(const classifier::Target& target, |
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52 | const utility::VectorBase& value) const; |
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53 | |
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54 | /// |
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55 | /// @return difference of the means of the two classes |
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56 | /// |
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57 | /// @param target |
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58 | /// @param value vector of the values (with weights) |
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59 | /// |
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60 | double score(const classifier::Target& target, |
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61 | const classifier::DataLookupWeighted1D& value) const; |
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62 | |
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63 | /// |
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64 | /// @return difference of the weighted means of the two classes |
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65 | /// |
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66 | /// @param target |
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67 | /// @param value vector of the values |
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68 | /// @param weight vector of accompanied weight to the values |
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69 | /// |
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70 | double score(const classifier::Target& target, |
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71 | const utility::VectorBase& value, |
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72 | const utility::VectorBase& weight) const; |
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73 | |
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74 | private: |
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75 | |
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76 | /// |
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77 | /// @brief Copy Constructor |
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78 | /// |
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79 | FoldChange(const FoldChange&); |
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80 | |
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81 | /// |
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82 | /// @brief Assignment operator |
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83 | /// |
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84 | FoldChange& operator=(const FoldChange&); |
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85 | |
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86 | }; |
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87 | |
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88 | }}} // of namespace statistics, yat, and theplu |
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89 | |
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90 | #endif |
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