source: trunk/yat/statistics/WilcoxonFoldChange.cc @ 1437

Last change on this file since 1437 was 1437, checked in by Peter, 13 years ago

merge patch release 0.4.2 to trunk. Delta 0.4.2-0.4.1

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
File size: 2.2 KB
Line 
1// $Id: WilcoxonFoldChange.cc 1437 2008-08-25 17:55:00Z peter $
2
3/*
4  Copyright (C) 2005 Peter Johansson
5  Copyright (C) 2006, 2007 Jari Häkkinen, Peter Johansson
6  Copyright (C) 2008 Peter Johansson
7
8  This file is part of the yat library, http://dev.thep.lu.se/yat
9
10  The yat library is free software; you can redistribute it and/or
11  modify it under the terms of the GNU General Public License as
12  published by the Free Software Foundation; either version 2 of the
13  License, or (at your option) any later version.
14
15  The yat library is distributed in the hope that it will be useful,
16  but WITHOUT ANY WARRANTY; without even the implied warranty of
17  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
18  General Public License for more details.
19
20  You should have received a copy of the GNU General Public License
21  along with this program; if not, write to the Free Software
22  Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
23  02111-1307, USA.
24*/
25
26#include "WilcoxonFoldChange.h"
27#include "utility.h"
28#include "yat/classifier/Target.h"
29
30#include <cmath>
31#include <vector>
32#include <iostream>
33
34namespace theplu {
35namespace yat {
36namespace statistics {
37
38
39  WilcoxonFoldChange::WilcoxonFoldChange(bool absolute)
40    : Score(absolute)
41  {
42  }
43
44
45  double WilcoxonFoldChange::score(const classifier::Target& target, 
46                                   const utility::VectorBase& value) const
47  {
48    std::vector<double> distance;
49    //Peter, should reserve the vector to avoid reallocations   
50    for (size_t i=0; i<target.size(); i++) {
51      if (target.binary(i)) continue;
52      for (size_t j=0; j<target.size(); j++) {
53        if (!target.binary(j))
54          distance.push_back(value(i)-value(j));
55      }
56    }
57    if (absolute_)
58      return fabs(median(distance.begin(), distance.end()));
59    return median(distance.begin(), distance.end());
60  }
61
62
63  double WilcoxonFoldChange::score
64  (const classifier::Target& target, 
65   const classifier::DataLookupWeighted1D& value) const
66  {
67    std::cerr << " WilcoxonFoldChange::score  not implemented" << std::endl;
68    return 0;
69  }
70
71
72  double WilcoxonFoldChange::score(const classifier::Target& target, 
73                                   const utility::VectorBase& value,
74                                   const utility::VectorBase& weight) const
75  {
76    std::cerr << " WilcoxonFoldChange::score  not implemented" << std::endl;
77    return 0;
78  }
79
80}}} // of namespace statistics, yat, and theplu
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