source: trunk/yat/utility/Makefile.am

Last change on this file was 4359, checked in by Peter, 5 weeks ago

update copyright years using svndigest 0.11 (in contrast to 0.10.x previously)
  • Property svn:keywords set to Id
File size: 7.8 KB
Line 
1## $Id: Makefile.am 4359 2023-08-23 01:28:46Z peter $
2
3# Copyright (C) 2005, 2006, 2007, 2008 Jari Häkkinen, Peter Johansson
4# Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2020, 2021, 2022, 2023 Peter Johansson
5#
6# This file is part of the yat library, http://dev.thep.lu.se/yat
7#
8# The yat library is free software; you can redistribute it and/or
9# modify it under the terms of the GNU General Public License as
10# published by the Free Software Foundation; either version 3 of the
11# License, or (at your option) any later version.
12#
13# The yat library is distributed in the hope that it will be useful,
14# but WITHOUT ANY WARRANTY; without even the implied warranty of
15# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
16# General Public License for more details.
17#
18# You should have received a copy of the GNU General Public License
19# along with yat. If not, see <http://www.gnu.org/licenses/>.
20
21yat_libyat_la_SOURCES += \
22  yat/utility/Aligner.cc \
23  yat/utility/Alignment.cc \
24  yat/utility/BasicMatrix.cc \
25  yat/utility/BFGS.cc \
26  yat/utility/BFGS2.cc \
27  yat/utility/Bisection.cc \
28  yat/utility/Brent.cc \
29  yat/utility/BrentMinimizer.cc \
30  yat/utility/CholeskyDecomposer.cc \
31  yat/utility/Cigar.cc \
32  yat/utility/ColumnStream.cc \
33  yat/utility/CommandLine.cc \
34  yat/utility/DataWeight.cc \
35  yat/utility/Deleter.cc \
36  yat/utility/DiagonalMatrix.cc \
37  yat/utility/Exception.cc \
38  yat/utility/FalsePosition.cc \
39  yat/utility/FileUtil.cc \
40  yat/utility/FletcherReevesConjugate.cc \
41  yat/utility/GetlineIterator.cc \
42  yat/utility/GoldenSection.cc \
43  yat/utility/Index.cc \
44  yat/utility/KernelPCA.cc \
45  yat/utility/kNNI.cc \
46  yat/utility/mAlignerBase.cc \
47  yat/utility/mNeedlemanWunsch.cc \
48  yat/utility/mSemiLocalAligner.cc \
49  yat/utility/mSmithWaterman.cc \
50  yat/utility/mSmithWaterman2.cc \
51  yat/utility/Matrix.cc \
52  yat/utility/MatrixBase.cc \
53  yat/utility/MatrixConstView.cc \
54  yat/utility/MatrixMutable.cc \
55  yat/utility/MatrixView.cc \
56  yat/utility/MatrixWeighted.cc \
57  yat/utility/Minimizer.cc \
58  yat/utility/MultiMinimizer.cc \
59  yat/utility/MultiMinimizerDerivative.cc \
60  yat/utility/NeedlemanWunsch.cc \
61  yat/utility/NelderMeadSimplex.cc \
62  yat/utility/NelderMeadSimplex2.cc \
63  yat/utility/NelderMeadSimplex2Rand.cc \
64  yat/utility/Newton.cc \
65  yat/utility/NNI.cc \
66  yat/utility/Option.cc \
67  yat/utility/OptionFile.cc \
68  yat/utility/OptionInFile.cc \
69  yat/utility/OptionOutFile.cc \
70  yat/utility/OptionHelp.cc \
71  yat/utility/OptionSwitch.cc \
72  yat/utility/OptionVersion.cc \
73  yat/utility/PCA.cc \
74  yat/utility/PolakRibiereConjugate.cc \
75  yat/utility/QuadGolden.cc \
76  yat/utility/RootFinder.cc \
77  yat/utility/RootFinderDerivative.cc \
78  yat/utility/Secant.cc \
79  yat/utility/split.cc \
80  yat/utility/stl_utility.cc \
81  yat/utility/Scheduler.cc \
82  yat/utility/SmithWaterman.cc \
83  yat/utility/Steffenson.cc \
84  yat/utility/SteepestDescent.cc \
85  yat/utility/SVD.cc \
86  yat/utility/TypeInfo.cc \
87  yat/utility/utility.cc \
88  yat/utility/Vector.cc \
89  yat/utility/VectorBase.cc \
90  yat/utility/VectorConstView.cc \
91  yat/utility/VectorMutable.cc \
92  yat/utility/VectorView.cc \
93  yat/utility/version.cc \
94  yat/utility/WeNNI.cc
95
96nobase_include_HEADERS += \
97  $(srcdir)/yat/utility/Aligner.h \
98  $(srcdir)/yat/utility/Alignment.h \
99  $(srcdir)/yat/utility/BasicMatrix.h \
100  $(srcdir)/yat/utility/BasicVector.h \
101  $(srcdir)/yat/utility/BasicQueue.h \
102  $(srcdir)/yat/utility/BFGS.h \
103  $(srcdir)/yat/utility/BFGS2.h \
104  $(srcdir)/yat/utility/BinaryIstreamIterator.h \
105  $(srcdir)/yat/utility/BinaryOstreamIterator.h \
106  $(srcdir)/yat/utility/BLAS_level1.h \
107  $(srcdir)/yat/utility/BLAS_level2.h \
108  $(srcdir)/yat/utility/BLAS_level3.h \
109  $(srcdir)/yat/utility/BLAS_utility.h \
110  $(srcdir)/yat/utility/boost_exception_ptr.h \
111  $(srcdir)/yat/utility/Bisection.h \
112  $(srcdir)/yat/utility/Brent.h \
113  $(srcdir)/yat/utility/BrentMinimizer.h \
114  $(srcdir)/yat/utility/CholeskyDecomposer.h \
115  $(srcdir)/yat/utility/Cigar.h \
116  $(srcdir)/yat/utility/CigarIterator.h \
117  $(srcdir)/yat/utility/ColumnStream.h \
118  $(srcdir)/yat/utility/CommandLine.h \
119  $(srcdir)/yat/utility/concept_check.h \
120  $(srcdir)/yat/utility/Container2DIterator.h \
121  $(srcdir)/yat/utility/DataIterator.h \
122  $(srcdir)/yat/utility/DataWeight.h \
123  $(srcdir)/yat/utility/DataWeightProxy.h \
124  $(srcdir)/yat/utility/Deleter.h \
125  $(srcdir)/yat/utility/deprecate.h \
126  $(srcdir)/yat/utility/DiagonalMatrix.h \
127  $(srcdir)/yat/utility/Exception.h \
128  $(srcdir)/yat/utility/FalsePosition.h \
129  $(srcdir)/yat/utility/FileUtil.h \
130  $(srcdir)/yat/utility/FletcherReevesConjugate.h \
131  $(srcdir)/yat/utility/GetlineIterator.h \
132  $(srcdir)/yat/utility/getvector.h \
133  $(srcdir)/yat/utility/GoldenSection.h \
134  $(srcdir)/yat/utility/Index.h \
135  $(srcdir)/yat/utility/iterator_traits.h \
136  $(srcdir)/yat/utility/KernelMatrix.h \
137  $(srcdir)/yat/utility/KernelPCA.h \
138  $(srcdir)/yat/utility/kNNI.h \
139  $(srcdir)/yat/utility/Matrix.h \
140  $(srcdir)/yat/utility/MatrixBase.h \
141  $(srcdir)/yat/utility/MatrixConstView.h \
142  $(srcdir)/yat/utility/MatrixExpression.h \
143  $(srcdir)/yat/utility/MatrixMutable.h \
144  $(srcdir)/yat/utility/MatrixView.h \
145  $(srcdir)/yat/utility/MatrixWeighted.h \
146  $(srcdir)/yat/utility/mAligner.h \
147  $(srcdir)/yat/utility/mAlignerBase.h \
148  $(srcdir)/yat/utility/merge.h \
149  $(srcdir)/yat/utility/mNeedlemanWunsch.h \
150  $(srcdir)/yat/utility/mSemiLocalAligner.h \
151  $(srcdir)/yat/utility/mSmithWaterman.h \
152  $(srcdir)/yat/utility/mSmithWaterman2.h \
153  $(srcdir)/yat/utility/MergeIterator.h \
154  $(srcdir)/yat/utility/Minimizer.h \
155  $(srcdir)/yat/utility/MultiMinimizer.h \
156  $(srcdir)/yat/utility/MultiMinimizerDerivative.h \
157  $(srcdir)/yat/utility/multiprocess.h \
158  $(srcdir)/yat/utility/NeedlemanWunsch.h \
159  $(srcdir)/yat/utility/NelderMeadSimplex.h \
160  $(srcdir)/yat/utility/NelderMeadSimplex2.h \
161  $(srcdir)/yat/utility/NelderMeadSimplex2Rand.h \
162  $(srcdir)/yat/utility/Newton.h \
163  $(srcdir)/yat/utility/NNI.h \
164  $(srcdir)/yat/utility/Option.h \
165  $(srcdir)/yat/utility/OptionArg.h \
166  $(srcdir)/yat/utility/OptionFile.h \
167  $(srcdir)/yat/utility/OptionInFile.h \
168  $(srcdir)/yat/utility/OptionOutFile.h \
169  $(srcdir)/yat/utility/OptionHelp.h \
170  $(srcdir)/yat/utility/OptionSwitch.h \
171  $(srcdir)/yat/utility/OptionVersion.h \
172  $(srcdir)/yat/utility/OstreamIterator.h \
173  $(srcdir)/yat/utility/PCA.h \
174  $(srcdir)/yat/utility/PolakRibiereConjugate.h \
175  $(srcdir)/yat/utility/PriorityQueue.h \
176  $(srcdir)/yat/utility/QuadGolden.h \
177  $(srcdir)/yat/utility/Queue.h \
178  $(srcdir)/yat/utility/RootFinder.h \
179  $(srcdir)/yat/utility/RootFinderDerivative.h \
180  $(srcdir)/yat/utility/round.h \
181  $(srcdir)/yat/utility/Scheduler.h \
182  $(srcdir)/yat/utility/Secant.h \
183  $(srcdir)/yat/utility/Segment.h \
184  $(srcdir)/yat/utility/SegmentMap.h \
185  $(srcdir)/yat/utility/SegmentSet.h \
186  $(srcdir)/yat/utility/SegmentTree.h \
187  $(srcdir)/yat/utility/SmartPtr.h \
188  $(srcdir)/yat/utility/SmithWaterman.h \
189  $(srcdir)/yat/utility/SortedBuffer.h \
190  $(srcdir)/yat/utility/sort_index.h \
191  $(srcdir)/yat/utility/split.h \
192  $(srcdir)/yat/utility/SteepestDescent.h \
193  $(srcdir)/yat/utility/Steffenson.h \
194  $(srcdir)/yat/utility/StreamRedirect.h \
195  $(srcdir)/yat/utility/Range.h \
196  $(srcdir)/yat/utility/Ranking.h \
197  $(srcdir)/yat/utility/stl_utility.h \
198  $(srcdir)/yat/utility/StrideIterator.h \
199  $(srcdir)/yat/utility/SVD.h \
200  $(srcdir)/yat/utility/TypeInfo.h \
201  $(srcdir)/yat/utility/utility.h \
202  $(srcdir)/yat/utility/Vector.h \
203  $(srcdir)/yat/utility/VectorBase.h \
204  $(srcdir)/yat/utility/VectorConstView.h \
205  $(srcdir)/yat/utility/VectorExpression.h \
206  $(srcdir)/yat/utility/VectorMutable.h \
207  $(srcdir)/yat/utility/VectorView.h \
208  $(srcdir)/yat/utility/version.h \
209  $(srcdir)/yat/utility/WeightedIteratorArchetype.h \
210  $(srcdir)/yat/utility/WeightedIterator.h \
211  $(srcdir)/yat/utility/WeightIterator.h \
212  $(srcdir)/yat/utility/WeNNI.h \
213  $(srcdir)/yat/utility/yat_assert.h
214
215nobase_nodist_include_HEADERS = yat/utility/config_public.h
216
217include yat/utility/expression/Makefile.am
218include yat/utility/multivariable/Makefile.am
219include yat/utility/ranking/Makefile.am
220include yat/utility/univariable/Makefile.am
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