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Last change
on this file since 3204 was
3204,
checked in by Peter, 9 years ago
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interface of new convenience class SmithWaterman? that uses the Aligner class and provides more convenient things like slightly different CIGAR and position on the reference etc.
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Property svn:eol-style set to
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Id
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File size:
906 bytes
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| 1 | // $Id: SmithWaterman.cc 3204 2014-05-03 15:23:41Z peter $ |
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| 2 | |
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| 3 | /* |
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| 4 | Copyright (C) 2014 Peter Johansson |
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| 5 | |
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| 6 | This file is part of the yat library, http://dev.thep.lu.se/yat |
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| 7 | |
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| 8 | The yat library is free software; you can redistribute it and/or |
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| 9 | modify it under the terms of the GNU General Public License as |
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| 10 | published by the Free Software Foundation; either version 3 of the |
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| 11 | License, or (at your option) any later version. |
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| 12 | |
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| 13 | The yat library is distributed in the hope that it will be useful, |
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| 14 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 15 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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| 16 | General Public License for more details. |
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| 17 | |
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| 18 | You should have received a copy of the GNU General Public License |
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| 19 | along with yat. If not, see <http://www.gnu.org/licenses/>. |
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| 20 | */ |
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| 21 | |
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| 22 | #include <config.h> |
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| 23 | |
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| 24 | #include "SmithWaterman.h" |
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| 25 | |
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| 26 | #include <cassert> |
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| 27 | |
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| 28 | namespace theplu { |
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| 29 | namespace yat { |
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| 30 | namespace utility { |
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| 31 | |
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| 32 | }}} // of namespace utility, yat, and theplu |
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