source: trunk/yat/utility

Name Size Rev Age Author Last Change
../
expression 3999   2 years Peter update copyright years
multivariable 4252   2 weeks Peter merge 0.20 release into trunk
ranking 4207   3 months Peter update copyright statements
univariable 4252   2 weeks Peter merge 0.20 release into trunk
Aligner.cc 7.1 KB 4207   3 months Peter update copyright statements
Aligner.h 10.1 KB 4207   3 months Peter update copyright statements
Alignment.cc 2.3 KB 4207   3 months Peter update copyright statements
Alignment.h 4.1 KB 4207   3 months Peter update copyright statements
BasicMatrix.cc 3.8 KB 4207   3 months Peter update copyright statements
BasicMatrix.h 3.4 KB 4207   3 months Peter update copyright statements
BasicQueue.h 6.8 KB 4043   21 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
BasicVector.h 2.0 KB 3605   6 years Peter A first go at implementing template expression in order to provide …
BFGS2.cc 940 bytes 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
BFGS2.h 1.1 KB 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
BFGS.cc 936 bytes 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
BFGS.h 1.1 KB 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
BinaryIstreamIterator.h 2.4 KB 3902   3 years Peter closes #915. New functions that read and write numbers in binary format.
BinaryOstreamIterator.h 2.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
Bisection.cc 910 bytes 4252   2 weeks Peter merge 0.20 release into trunk
Bisection.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
BLAS_level1.h 4.5 KB 3678   5 years Peter docs
BLAS_level2.h 3.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
BLAS_level3.h 5.1 KB 3908   3 years Peter #closes #881 Lift out expression classes to their own files, so they …
BLAS_utility.h 1016 bytes 3605   6 years Peter A first go at implementing template expression in order to provide …
boost_exception_ptr.h 13.2 KB 3047   9 years Peter add missing Id tag
Brent.cc 894 bytes 4252   2 weeks Peter merge 0.20 release into trunk
Brent.h 1.0 KB 4252   2 weeks Peter merge 0.20 release into trunk
BrentMinimizer.cc 920 bytes 4252   2 weeks Peter merge 0.20 release into trunk
BrentMinimizer.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
Cigar.cc 2.6 KB 4003   2 years Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
Cigar.h 3.3 KB 4005   2 years Peter int8_t needs <cstdint> when sam.h isn't included
CigarIterator.h 3.9 KB 3792   4 years Peter update copyright years
ColumnStream.cc 3.5 KB 3330   8 years Peter update copyright years
ColumnStream.h 2.4 KB 3330   8 years Peter update copyright years
CommandLine.cc 7.0 KB 4252   2 weeks Peter merge 0.20 release into trunk
CommandLine.h 7.2 KB 4207   3 months Peter update copyright statements
concept_check.h 8.0 KB 4207   3 months Peter update copyright statements
config_public.h.in 2.6 KB 4104   14 months Peter make doxygen happy
Container2DIterator.h 4.7 KB 4207   3 months Peter update copyright statements
DataIterator.h 3.5 KB 3550   6 years Peter Update copyright years. Happy New Year
DataWeight.cc 1.9 KB 4207   3 months Peter update copyright statements
DataWeight.h 2.9 KB 4207   3 months Peter update copyright statements
DataWeightProxy.h 4.8 KB 4254   10 days Peter closes #986
Deleter.cc 995 bytes 2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Deleter.h 1.7 KB 4089   15 months Peter updating copyright years
deprecate.h 1.8 KB 4207   3 months Peter update copyright statements
DiagonalMatrix.cc 3.8 KB 4207   3 months Peter update copyright statements
DiagonalMatrix.h 10.5 KB 4207   3 months Peter update copyright statements
Exception.cc 1.7 KB 4207   3 months Peter update copyright statements
Exception.h 3.0 KB 4089   15 months Peter updating copyright years
FalsePosition.cc 921 bytes 4252   2 weeks Peter merge 0.20 release into trunk
FalsePosition.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
FileUtil.cc 2.7 KB 3670   5 years Peter update copyright years
FileUtil.h 3.3 KB 4207   3 months Peter update copyright statements
FletcherReevesConjugate.cc 994 bytes 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
FletcherReevesConjugate.h 1.2 KB 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
GetlineIterator.cc 1.5 KB 4207   3 months Peter update copyright statements
GetlineIterator.h 2.7 KB 3210   9 years Peter update copyright years
getvector.h 3.7 KB 4207   3 months Peter update copyright statements
GoldenSection.cc 925 bytes 4252   2 weeks Peter merge 0.20 release into trunk
GoldenSection.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
Index.cc 2.1 KB 4207   3 months Peter update copyright statements
Index.h 2.5 KB 4207   3 months Peter update copyright statements
iterator_traits.h 11.2 KB 3550   6 years Peter Update copyright years. Happy New Year
KernelMatrix.h 5.6 KB 3190   9 years Peter new class KernelMatrix?. closes #381
KernelPCA.cc 2.2 KB 4207   3 months Peter update copyright statements
KernelPCA.h 2.7 KB 4207   3 months Peter update copyright statements
kNNI.cc 2.8 KB 4207   3 months Peter update copyright statements
kNNI.h 2.3 KB 4207   3 months Peter update copyright statements
Makefile 786 bytes 2824   10 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 7.2 KB 4252   2 weeks Peter merge 0.20 release into trunk
Matrix.cc 6.8 KB 4207   3 months Peter update copyright statements
Matrix.h 10.6 KB 4207   3 months Peter update copyright statements
MatrixBase.cc 4.4 KB 4207   3 months Peter update copyright statements
MatrixBase.h 7.0 KB 4252   2 weeks Peter merge 0.20 release into trunk
MatrixConstView.cc 2.8 KB 4141   10 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
MatrixConstView.h 2.5 KB 4141   10 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
MatrixExpression.h 3.4 KB 3938   2 years Peter let configure fail if compiler is not a C++11 compiler. …
MatrixMutable.cc 6.0 KB 4207   3 months Peter update copyright statements
MatrixMutable.h 10.0 KB 4207   3 months Peter update copyright statements
MatrixView.cc 3.1 KB 4141   10 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
MatrixView.h 4.6 KB 4141   10 months Peter closes #977. Implement view into gsl_vector, gsl_matrix, and arrays.
MatrixWeighted.cc 6.0 KB 4207   3 months Peter update copyright statements
MatrixWeighted.h 6.8 KB 4207   3 months Peter update copyright statements
merge.h 9.2 KB 3225   9 years Peter make code more readable
MergeIterator.h 5.7 KB 3792   4 years Peter update copyright years
Minimizer.cc 1.6 KB 4252   2 weeks Peter merge 0.20 release into trunk
Minimizer.h 4.7 KB 4252   2 weeks Peter merge 0.20 release into trunk
MultiMinimizer.cc 1.7 KB 4252   2 weeks Peter merge 0.20 release into trunk
MultiMinimizer.h 5.3 KB 4252   2 weeks Peter merge 0.20 release into trunk
MultiMinimizerDerivative.cc 1.8 KB 4252   2 weeks Peter merge 0.20 release into trunk
MultiMinimizerDerivative.h 6.2 KB 4252   2 weeks Peter merge 0.20 release into trunk
multiprocess.h 6.4 KB 4076   15 months Peter fixed docs typo
NelderMeadSimplex2.cc 1004 bytes 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
NelderMeadSimplex2.h 1.2 KB 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
NelderMeadSimplex2Rand.cc 1020 bytes 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
NelderMeadSimplex2Rand.h 1.2 KB 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
NelderMeadSimplex.cc 1000 bytes 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
NelderMeadSimplex.h 1.2 KB 4172   7 months Peter refs #978. Wrapper classes around gsl_multimin_fminimizer.
Newton.cc 910 bytes 4252   2 weeks Peter merge 0.20 release into trunk
Newton.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
NNI.cc 3.1 KB 4207   3 months Peter update copyright statements
NNI.h 5.0 KB 4207   3 months Peter update copyright statements
Option.cc 3.0 KB 4207   3 months Peter update copyright statements
Option.h 3.7 KB 4207   3 months Peter update copyright statements
OptionArg.h 4.7 KB 3114   9 years Peter update copyright years
OptionFile.cc 2.5 KB 4207   3 months Peter update copyright statements
OptionFile.h 2.5 KB 4207   3 months Peter update copyright statements
OptionHelp.cc 1.7 KB 4207   3 months Peter update copyright statements
OptionHelp.h 2.8 KB 4207   3 months Peter update copyright statements
OptionInFile.cc 1.5 KB 4207   3 months Peter update copyright statements
OptionInFile.h 2.1 KB 4207   3 months Peter update copyright statements
OptionOutFile.cc 1.5 KB 4207   3 months Peter update copyright statements
OptionOutFile.h 2.1 KB 4207   3 months Peter update copyright statements
OptionSwitch.cc 1.9 KB 4207   3 months Peter update copyright statements
OptionSwitch.h 2.0 KB 4207   3 months Peter update copyright statements
OptionVersion.cc 3.1 KB 4183   5 months Peter prefer passing by const& not by value
OptionVersion.h 3.6 KB 4183   5 months Peter prefer passing by const& not by value
OstreamIterator.h 3.7 KB 4252   2 weeks Peter merge 0.20 release into trunk
PCA.cc 3.2 KB 4207   3 months Peter update copyright statements
PCA.h 3.4 KB 4207   3 months Peter update copyright statements
PolakRibiereConjugate.cc 988 bytes 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
PolakRibiereConjugate.h 1.2 KB 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
PriorityQueue.h 3.6 KB 3999   2 years Peter update copyright years
QuadGolden.cc 914 bytes 4252   2 weeks Peter merge 0.20 release into trunk
QuadGolden.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
Queue.h 2.9 KB 3999   2 years Peter update copyright years
Range.h 4.9 KB 4245   2 months Peter GCC -Wdeprecated-copy complains when some but not all of copy ctor, …
Ranking.h 21.5 KB 4087   15 months Peter extend docs; closes #710
RootFinder.cc 1.9 KB 4252   2 weeks Peter merge 0.20 release into trunk
RootFinder.h 5.5 KB 4252   2 weeks Peter merge 0.20 release into trunk
RootFinderDerivative.cc 1.7 KB 4252   2 weeks Peter merge 0.20 release into trunk
RootFinderDerivative.h 5.3 KB 4252   2 weeks Peter merge 0.20 release into trunk
round.h 2.1 KB 4059   20 months Peter new function: round, which is rounding elements in a range with the …
Scheduler.cc 14.7 KB 4204   3 months Peter merge release 0.19.2 into trunk
Scheduler.h 11.2 KB 3948   2 years Peter replace boost::thread with std::thread in Scheduler. refs #953
Secant.cc 910 bytes 4252   2 weeks Peter merge 0.20 release into trunk
Secant.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
Segment.h 8.2 KB 4089   15 months Peter updating copyright years
SegmentMap.h 1.6 KB 2992   10 years Peter set svndigest:ignore proprty to reflect when files were initially …
SegmentSet.h 6.1 KB 4039   22 months Peter Using me::value_type propagated to compilation errors and created …
SegmentTree.h 10.5 KB 4032   23 months Peter merge release 0.18.1 into trunk
SmartPtr.h 3.5 KB 3992   2 years Peter recommend std rather than boost
SmithWaterman.cc 2.5 KB 4207   3 months Peter update copyright statements
SmithWaterman.h 4.5 KB 4207   3 months Peter update copyright statements
sort_index.h 7.0 KB 3550   6 years Peter Update copyright years. Happy New Year
SortedBuffer.h 3.6 KB 4057   20 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
split.cc 1.7 KB 4207   3 months Peter update copyright statements
split.h 1.8 KB 2898   10 years Peter dox typo
SteepestDescent.cc 973 bytes 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
SteepestDescent.h 1.1 KB 4175   6 months Peter add wrapper classes around GSL's multimin algos using derivative. …
Steffenson.cc 926 bytes 4252   2 weeks Peter merge 0.20 release into trunk
Steffenson.h 1.1 KB 4252   2 weeks Peter merge 0.20 release into trunk
stl_utility.cc 1.3 KB 2919   10 years Peter update copyright years
stl_utility.h 24.6 KB 4207   3 months Peter update copyright statements
StreamRedirect.h 6.4 KB 4207   3 months Peter update copyright statements
StrideIterator.h 4.3 KB 4207   3 months Peter update copyright statements
SVD.cc 3.0 KB 4207   3 months Peter update copyright statements
SVD.h 3.8 KB 4207   3 months Peter update copyright statements
TypeInfo.cc 1.8 KB 4200   3 months Peter removing trailing whitespace and empty lines at bottom of files.
TypeInfo.h 2.5 KB 4207   3 months Peter update copyright statements
utility.cc 5.7 KB 4207   3 months Peter update copyright statements
utility.h 22.5 KB 4207   3 months Peter update copyright statements
Vector.cc 5.2 KB 4089   15 months Peter updating copyright years
Vector.h 5.9 KB 3938   2 years Peter let configure fail if compiler is not a C++11 compiler. …
VectorBase.cc 8.0 KB 3871   3 years Peter closes #932
VectorBase.h 9.6 KB 3871   3 years Peter closes #932
VectorConstView.cc 3.2 KB 4207   3 months Peter update copyright statements
VectorConstView.h 4.2 KB 4207   3 months Peter update copyright statements
VectorExpression.h 3.8 KB 3999   2 years Peter update copyright years
VectorMutable.cc 4.7 KB 3987   2 years Peter merge release 0.17.2 into trunk
VectorMutable.h 6.6 KB 3661   5 years Peter update copyright years
VectorView.cc 4.1 KB 4207   3 months Peter update copyright statements
VectorView.h 6.6 KB 4207   3 months Peter update copyright statements
version.cc 1.2 KB 2919   10 years Peter update copyright years
version.h 2.3 KB 4207   3 months Peter update copyright statements
WeightedIterator.h 6.2 KB 3461   7 years Peter docs
WeightedIteratorArchetype.h 6.2 KB 3579   6 years Peter merge release 0.14 into trunk
WeightIterator.h 3.7 KB 4207   3 months Peter update copyright statements
WeNNI.cc 2.9 KB 4207   3 months Peter update copyright statements
WeNNI.h 2.6 KB 4207   3 months Peter update copyright statements
yat_assert.h 2.3 KB 4207   3 months Peter update copyright statements
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