source:
trunk/yat/utility
@
3204
| Name | Size | Rev | Age | Author | Last Change |
|---|---|---|---|---|---|
| ../ | |||||
| Aligner.cc | 5.5 KB | 3202 | 9 years | make Cigar work also without bam.h, refs #785. #define YAT_CIGAR_ etc … | |
| Aligner.h | 6.2 KB | 3203 | 9 years | improve docs of CIGAR. closes #785 | |
| Alignment.cc | 2.3 KB | 2881 | 11 years | Define PP variables in config.h rather than in CPPFLAGS. Include … | |
| Alignment.h | 4.1 KB | 3192 | 9 years | docs: fix spelling and remove broken link. | |
| boost_exception_ptr.h | 13.2 KB | 3047 | 10 years | add missing Id tag | |
| ColumnStream.cc | 3.5 KB | 2919 | 10 years | update copyright years | |
| ColumnStream.h | 2.4 KB | 2526 | 12 years | update copyright years | |
| CommandLine.cc | 7.0 KB | 3114 | 10 years | update copyright years | |
| CommandLine.h | 7.2 KB | 3188 | 9 years | merge patch release 0.11.2 | |
| concept_check.h | 7.3 KB | 3114 | 10 years | update copyright years | |
| config_public.h.in | 1.9 KB | 3201 | 9 years | add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly. | |
| Container2DIterator.h | 3.8 KB | 2384 | 12 years | updating copyright years | |
| DataIterator.h | 3.4 KB | 2282 | 13 years | document and test that DataIterator? and WeightIterator? works … | |
| DataWeight.cc | 1.9 KB | 2919 | 10 years | update copyright years | |
| DataWeight.h | 2.9 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| DataWeightProxy.h | 4.8 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| Deleter.cc | 995 bytes | 2881 | 11 years | Define PP variables in config.h rather than in CPPFLAGS. Include … | |
| Deleter.h | 1.7 KB | 2858 | 11 years | closes #725 | |
| deprecate.h | 1.8 KB | 2124 | 13 years | updating url to dev.thep i couple of stray places | |
| Exception.cc | 1.6 KB | 2919 | 10 years | update copyright years | |
| Exception.h | 2.6 KB | 2526 | 12 years | update copyright years | |
| FileUtil.cc | 2.8 KB | 2837 | 11 years | avoid ancient inclusion guards around '#include <config.h>' | |
| FileUtil.h | 3.3 KB | 2125 | 13 years | fixes #575 - allow copy of FileUtil? | |
| GetlineIterator.cc | 1.5 KB | 2919 | 10 years | update copyright years | |
| GetlineIterator.h | 2.7 KB | 3148 | 9 years | remove white-space | |
| Index.cc | 2.1 KB | 2919 | 10 years | update copyright years | |
| Index.h | 2.5 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| iterator_traits.h | 11.0 KB | 3188 | 9 years | merge patch release 0.11.2 | |
| KernelMatrix.h | 5.6 KB | 3190 | 9 years | new class KernelMatrix?. closes #381 | |
| KernelPCA.cc | 2.2 KB | 2919 | 10 years | update copyright years | |
| KernelPCA.h | 2.7 KB | 2324 | 13 years | new class KernelPCA. closes #639 | |
| kNNI.cc | 2.8 KB | 2919 | 10 years | update copyright years | |
| kNNI.h | 2.3 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| Makefile | 786 bytes | 2824 | 11 years | remove intermediate libraries. Makefiles in corresponding … | |
| Makefile.am | 4.1 KB | 3204 | 9 years | interface of new convenience class SmithWaterman? that uses the Aligner … | |
| Matrix.cc | 12.7 KB | 2881 | 11 years | Define PP variables in config.h rather than in CPPFLAGS. Include … | |
| Matrix.h | 15.3 KB | 2735 | 11 years | fix matrix test and add new function trace | |
| MatrixWeighted.cc | 5.7 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| MatrixWeighted.h | 6.6 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| merge.h | 7.7 KB | 2372 | 12 years | adding concept checks merge | |
| MergeIterator.h | 5.0 KB | 3139 | 10 years | improve docs | |
| NNI.cc | 3.1 KB | 2919 | 10 years | update copyright years | |
| NNI.h | 4.9 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| Option.cc | 3.0 KB | 2919 | 10 years | update copyright years | |
| Option.h | 3.7 KB | 2384 | 12 years | updating copyright years | |
| OptionArg.h | 4.7 KB | 3114 | 10 years | update copyright years | |
| OptionFile.cc | 2.5 KB | 3114 | 10 years | update copyright years | |
| OptionFile.h | 2.5 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| OptionHelp.cc | 1.7 KB | 2919 | 10 years | update copyright years | |
| OptionHelp.h | 2.8 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| OptionInFile.cc | 1.5 KB | 2919 | 10 years | update copyright years | |
| OptionInFile.h | 2.1 KB | 2121 | 13 years | updating copyrights to uniform encoding in them. | |
| OptionOutFile.cc | 1.5 KB | 2919 | 10 years | update copyright years | |
| OptionOutFile.h | 2.1 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| OptionSwitch.cc | 1.9 KB | 2919 | 10 years | update copyright years | |
| OptionSwitch.h | 2.0 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| OstreamIterator.h | 3.6 KB | 3154 | 9 years | Happy New 2014 | |
| PCA.cc | 3.1 KB | 2919 | 10 years | update copyright years | |
| PCA.h | 3.2 KB | 2382 | 12 years | merged patch release 0.6.3 into trunk. | |
| Queue.h | 4.0 KB | 3188 | 9 years | merge patch release 0.11.2 | |
| Range.h | 5.1 KB | 3179 | 9 years | add reference to similar class in boost | |
| Segment.h | 5.1 KB | 2358 | 13 years | move most of SegmentSet? impl to a base class SegmentTree? and implement … | |
| SegmentMap.h | 1.6 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| SegmentSet.h | 2.8 KB | 2820 | 11 years | update copyright years | |
| SegmentTree.h | 10.0 KB | 3114 | 10 years | update copyright years | |
| SmartPtr.h | 3.4 KB | 2778 | 11 years | mark SmartPtr? as internal and point to boost::shared_ptr | |
| SmithWaterman.cc | 906 bytes | 3204 | 9 years | interface of new convenience class SmithWaterman? that uses the Aligner … | |
| SmithWaterman.h | 3.0 KB | 3204 | 9 years | interface of new convenience class SmithWaterman? that uses the Aligner … | |
| sort_index.cc | 2.0 KB | 2919 | 10 years | update copyright years | |
| sort_index.h | 3.1 KB | 2202 | 13 years | merging release 0.6 into trunk | |
| split.cc | 1.6 KB | 2881 | 11 years | Define PP variables in config.h rather than in CPPFLAGS. Include … | |
| split.h | 1.8 KB | 2898 | 10 years | dox typo | |
| stl_utility.cc | 1.3 KB | 2919 | 10 years | update copyright years | |
| stl_utility.h | 23.4 KB | 3084 | 10 years | improve docs | |
| StreamRedirect.h | 6.4 KB | 2061 | 14 years | removed include not needed | |
| StrideIterator.h | 4.2 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| SVD.cc | 3.0 KB | 2919 | 10 years | update copyright years | |
| SVD.h | 3.6 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| TypeInfo.cc | 1.8 KB | 2919 | 10 years | update copyright years | |
| TypeInfo.h | 2.6 KB | 2119 | 13 years | converted files to utf-8. fixes #577 | |
| utility.cc | 4.5 KB | 3114 | 10 years | update copyright years | |
| utility.h | 12.7 KB | 3188 | 9 years | merge patch release 0.11.2 | |
| Vector.cc | 5.2 KB | 3169 | 9 years | use private function create_gsl_vector rather than calling gsl … | |
| Vector.h | 4.8 KB | 3101 | 10 years | remove forward declaration not needed (class matrix was renamed almost … | |
| VectorBase.cc | 5.1 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| VectorBase.h | 7.5 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| VectorConstView.cc | 2.6 KB | 3114 | 10 years | update copyright years | |
| VectorConstView.h | 3.6 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| VectorMutable.cc | 4.0 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| VectorMutable.h | 5.6 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| VectorView.cc | 3.3 KB | 3114 | 10 years | update copyright years | |
| VectorView.h | 6.0 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| version.cc | 1.2 KB | 2919 | 10 years | update copyright years | |
| version.h | 2.3 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| WeightedIterator.h | 4.9 KB | 2375 | 12 years | improve docs for WeightedIterator? and DataWeightProxy? and add some … | |
| WeightIterator.h | 3.5 KB | 2992 | 10 years | set svndigest:ignore proprty to reflect when files were initially … | |
| WeNNI.cc | 2.9 KB | 2919 | 10 years | update copyright years | |
| WeNNI.h | 2.7 KB | 2526 | 12 years | update copyright years | |
| yat_assert.h | 2.3 KB | 3188 | 9 years | merge patch release 0.11.2 | |
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