source: trunk/yat/utility @ 4117

Name Size Rev Age Author Last Change
../
expression 3999   14 months Peter update copyright years
ranking 4087   3 months Peter extend docs; closes #710
Aligner.cc 7.1 KB 4089   3 months Peter updating copyright years
Aligner.h 10.1 KB 4089   3 months Peter updating copyright years
Alignment.cc 2.3 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Alignment.h 4.1 KB 3210   8 years Peter update copyright years
BasicMatrix.cc 2.5 KB 3999   14 months Peter update copyright years
BasicMatrix.h 3.0 KB 3651   4 years Peter
BasicQueue.h 6.8 KB 4043   9 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
BasicVector.h 2.0 KB 3605   5 years Peter A first go at implementing template expression in order to provide …
BinaryIstreamIterator.h 2.4 KB 3902   19 months Peter closes #915. New functions that read and write numbers in binary format.
BinaryOstreamIterator.h 2.0 KB 3902   19 months Peter closes #915. New functions that read and write numbers in binary format.
BLAS_level1.h 4.5 KB 3678   4 years Peter docs
BLAS_level2.h 3.1 KB 3999   14 months Peter update copyright years
BLAS_level3.h 5.1 KB 3908   19 months Peter #closes #881 Lift out expression classes to their own files, so they …
BLAS_utility.h 1016 bytes 3605   5 years Peter A first go at implementing template expression in order to provide …
boost_exception_ptr.h 13.2 KB 3047   9 years Peter add missing Id tag
Cigar.cc 2.6 KB 4003   14 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
Cigar.h 3.3 KB 4005   14 months Peter int8_t needs <cstdint> when sam.h isn't included
CigarIterator.h 3.9 KB 3792   3 years Peter update copyright years
ColumnStream.cc 3.5 KB 3330   7 years Peter update copyright years
ColumnStream.h 2.4 KB 3330   7 years Peter update copyright years
CommandLine.cc 6.9 KB 3792   3 years Peter update copyright years
CommandLine.h 7.2 KB 3188   8 years Peter merge patch release 0.11.2
concept_check.h 8.0 KB 3792   3 years Peter update copyright years
config_public.h.in 2.6 KB 4104   3 months Peter make doxygen happy
Container2DIterator.h 3.6 KB 3417   7 years Peter updating copyright statements
DataIterator.h 3.5 KB 3550   5 years Peter Update copyright years. Happy New Year
DataWeight.cc 1.9 KB 2919   9 years Peter update copyright years
DataWeight.h 2.9 KB 2119   12 years Peter converted files to utf-8. fixes #577
DataWeightProxy.h 4.7 KB 3550   5 years Peter Update copyright years. Happy New Year
Deleter.cc 995 bytes 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Deleter.h 1.7 KB 4089   3 months Peter updating copyright years
deprecate.h 1.8 KB 3295   7 years Peter merge release 0.12 into trunk
DiagonalMatrix.cc 3.8 KB 4105   2 months Peter implement +=, -=, and *= operators for DiagonalMatrix?; prefer using …
DiagonalMatrix.h 10.5 KB 4105   2 months Peter implement +=, -=, and *= operators for DiagonalMatrix?; prefer using …
Exception.cc 1.7 KB 4089   3 months Peter updating copyright years
Exception.h 3.0 KB 4089   3 months Peter updating copyright years
FileUtil.cc 2.7 KB 3670   4 years Peter update copyright years
FileUtil.h 3.3 KB 2125   12 years Peter fixes #575 - allow copy of FileUtil?
GetlineIterator.cc 1.5 KB 3330   7 years Peter update copyright years
GetlineIterator.h 2.7 KB 3210   8 years Peter update copyright years
getvector.h 3.3 KB 4096   3 months Peter simplify code and alter private interface to reflect what's going on inside
Index.cc 2.1 KB 2919   9 years Peter update copyright years
Index.h 2.5 KB 2119   12 years Peter converted files to utf-8. fixes #577
iterator_traits.h 11.2 KB 3550   5 years Peter Update copyright years. Happy New Year
KernelMatrix.h 5.6 KB 3190   8 years Peter new class KernelMatrix?. closes #381
KernelPCA.cc 2.2 KB 3519   5 years Peter remove trailing ws
KernelPCA.h 2.6 KB 3661   4 years Peter update copyright years
kNNI.cc 2.8 KB 2919   9 years Peter update copyright years
kNNI.h 2.3 KB 2119   12 years Peter converted files to utf-8. fixes #577
Makefile 786 bytes 2824   9 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 5.2 KB 4089   3 months Peter updating copyright years
Matrix.cc 11.4 KB 4089   3 months Peter updating copyright years
Matrix.h 19.1 KB 4106   2 months Peter docs: c++11 is required
MatrixExpression.h 3.4 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
MatrixWeighted.cc 6.0 KB 4089   3 months Peter updating copyright years
MatrixWeighted.h 6.8 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
merge.h 9.2 KB 3225   8 years Peter make code more readable
MergeIterator.h 5.7 KB 3792   3 years Peter update copyright years
multiprocess.h 6.4 KB 4076   3 months Peter fixed docs typo
NNI.cc 3.1 KB 2919   9 years Peter update copyright years
NNI.h 4.9 KB 2119   12 years Peter converted files to utf-8. fixes #577
Option.cc 3.0 KB 2919   9 years Peter update copyright years
Option.h 3.7 KB 2384   11 years Peter updating copyright years
OptionArg.h 4.7 KB 3114   8 years Peter update copyright years
OptionFile.cc 2.5 KB 3114   8 years Peter update copyright years
OptionFile.h 2.5 KB 2119   12 years Peter converted files to utf-8. fixes #577
OptionHelp.cc 1.7 KB 2919   9 years Peter update copyright years
OptionHelp.h 2.8 KB 2119   12 years Peter converted files to utf-8. fixes #577
OptionInFile.cc 1.5 KB 2919   9 years Peter update copyright years
OptionInFile.h 2.1 KB 2121   12 years Peter updating copyrights to uniform encoding in them.
OptionOutFile.cc 1.5 KB 2919   9 years Peter update copyright years
OptionOutFile.h 2.1 KB 3330   7 years Peter update copyright years
OptionSwitch.cc 1.9 KB 2919   9 years Peter update copyright years
OptionSwitch.h 2.0 KB 2119   12 years Peter converted files to utf-8. fixes #577
OstreamIterator.h 3.6 KB 3154   8 years Peter Happy New 2014
PCA.cc 3.2 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
PCA.h 3.4 KB 3999   14 months Peter update copyright years
PriorityQueue.h 3.6 KB 3999   14 months Peter update copyright years
Queue.h 2.9 KB 3999   14 months Peter update copyright years
Range.h 5.3 KB 3259   7 years Peter deprecated class Range. closes #786
Ranking.h 21.5 KB 4087   3 months Peter extend docs; closes #710
round.h 2.1 KB 4059   8 months Peter new function: round, which is rounding elements in a range with the …
Scheduler.cc 13.9 KB 3948   17 months Peter replace boost::thread with std::thread in Scheduler. refs #953
Scheduler.h 11.2 KB 3948   17 months Peter replace boost::thread with std::thread in Scheduler. refs #953
Segment.h 8.2 KB 4089   3 months Peter updating copyright years
SegmentMap.h 1.6 KB 2992   9 years Peter set svndigest:ignore proprty to reflect when files were initially …
SegmentSet.h 6.1 KB 4039   10 months Peter Using me::value_type propagated to compilation errors and created …
SegmentTree.h 10.5 KB 4032   11 months Peter merge release 0.18.1 into trunk
SmartPtr.h 3.5 KB 3992   15 months Peter recommend std rather than boost
SmithWaterman.cc 2.5 KB 3212   8 years Peter move Cigar defines to a separate file
SmithWaterman.h 4.5 KB 3550   5 years Peter Update copyright years. Happy New Year
sort_index.h 7.0 KB 3550   5 years Peter Update copyright years. Happy New Year
SortedBuffer.h 3.6 KB 4057   8 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
split.cc 1.6 KB 2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
split.h 1.8 KB 2898   9 years Peter dox typo
stl_utility.cc 1.3 KB 2919   9 years Peter update copyright years
stl_utility.h 24.6 KB 3792   3 years Peter update copyright years
StreamRedirect.h 6.4 KB 2061   12 years Peter removed include not needed
StrideIterator.h 4.3 KB 3550   5 years Peter Update copyright years. Happy New Year
SVD.cc 3.0 KB 3999   14 months Peter update copyright years
SVD.h 3.8 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
TypeInfo.cc 1.8 KB 2919   9 years Peter update copyright years
TypeInfo.h 2.6 KB 2119   12 years Peter converted files to utf-8. fixes #577
utility.cc 5.7 KB 4097   3 months Peter use boost when functionality is available; prefer passing const& …
utility.h 22.5 KB 4102   3 months Peter add wrapper function that calls std::string::contains, ::starts_with, …
Vector.cc 5.2 KB 4089   3 months Peter updating copyright years
Vector.h 5.9 KB 3938   17 months Peter let configure fail if compiler is not a C++11 compiler. …
VectorBase.cc 8.0 KB 3871   21 months Peter closes #932
VectorBase.h 9.6 KB 3871   21 months Peter closes #932
VectorConstView.cc 2.7 KB 3661   4 years Peter update copyright years
VectorConstView.h 3.8 KB 3661   4 years Peter update copyright years
VectorExpression.h 3.8 KB 3999   14 months Peter update copyright years
VectorMutable.cc 4.7 KB 3987   16 months Peter merge release 0.17.2 into trunk
VectorMutable.h 6.6 KB 3661   4 years Peter update copyright years
VectorView.cc 3.8 KB 3623   5 years Peter merge release 0.14.1 into trunk move functions 'create_gsl_vector' …
VectorView.h 6.3 KB 3661   4 years Peter update copyright years
version.cc 1.2 KB 2919   9 years Peter update copyright years
version.h 2.3 KB 2992   9 years Peter set svndigest:ignore proprty to reflect when files were initially …
WeightedIterator.h 6.2 KB 3461   6 years Peter docs
WeightedIteratorArchetype.h 6.2 KB 3579   5 years Peter merge release 0.14 into trunk
WeightIterator.h 3.7 KB 3550   5 years Peter Update copyright years. Happy New Year
WeNNI.cc 2.9 KB 2919   9 years Peter update copyright years
WeNNI.h 2.7 KB 2526   10 years Peter update copyright years
yat_assert.h 2.3 KB 3188   8 years Peter merge patch release 0.11.2
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