Changeset 256 for trunk/src/Alignment.h


Ignore:
Timestamp:
Mar 3, 2005, 7:33:01 PM (17 years ago)
Author:
Peter
Message:

added functionality to get information about best path

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/src/Alignment.h

    r185 r256  
    33#ifndef _theplu_cpptools_alignment_
    44#define _theplu_cpptools_alignment_
     5
     6#include <utility>
     7#include <vector>
    58
    69namespace theplu {
     
    2730  /// sequences. The latter is penalized with \a gap, which means if
    2831  /// \a gap is large there will be no gaps in the best aligning (if
    29   /// the sequences have the same length).  @return score from the
    30   /// best aligning
     32  /// the sequences have the same length). \a path contains what
     33  /// elements in \A that is used in the best path. In case of
     34  /// degeneracy only one path is returned.
     35  ///
     36  /// @return score from the best aligning
    3137  ///
    3238  double NeedlemanWunsch(const gslapi::matrix& A,
     39                         std::vector<std::pair<size_t, size_t> >& path,
    3340                         const double gap);
    3441
Note: See TracChangeset for help on using the changeset viewer.