Changeset 261

Timestamp:

Mar 9, 2005, 6:06:19 PM (18 years ago)

Author:

Peter

Message:

fixed bug and added test for alignment

Location:

trunk

Files:

• src/Alignment.cc (modified) (1 diff)
• test/Makefile.am (modified) (2 diffs)
• test/data/isoform.peaks (added)
• test/test_alignment.cc (added)

trunk/src/Alignment.cc

@@ -23 +23 @@
     // choice(i,j) tells us how we came to s(i,j). 1 is diagonal, 2
     // vertical, and 3 horizontal,
-    gslapi::matrix choice(s.rows()-1,s.columns()-1);
+    gslapi::matrix choice(s.rows(),s.columns());
 
     // Calculating NeedlemanWunsch matrix

trunk/test/Makefile.am

@@ -4 +4 @@
 
 check_PROGRAMS =                                                    \
-  test_averagerpair test_consensus_inputranker test_crossvalidation \
+  test_alignment test_averagerpair test_consensus_inputranker \
+  test_crossvalidation  \
   test_inputranker test_kernel test_merge test_nni test_pca         \
   test_regression_linear test_regression_local test_rnd test_roc    \
@@ -16 +17 @@
 AM_LDFLAGS = -g
 
+test_alignment_SOURCES = test_alignment.cc
 test_averagerpair_SOURCES = test_averagerpair.cc
 test_consensus_inputranker_SOURCES = test_consensus_inputranker.cc