Changeset 2883


Ignore:
Timestamp:
Dec 3, 2012, 1:48:51 PM (9 years ago)
Author:
Peter
Message:

New classes to wrap around functionality provided by samtools. refs #729

Location:
trunk/yat/omic
Files:
10 added
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/yat/omic/Makefile.am

    r2824 r2883  
    2020# along with yat. If not, see <http://www.gnu.org/licenses/>.
    2121
     22if HAVE_SAMTOOLS
     23yat_libyat_la_SOURCES += yat/omic/BamFile.cc
     24yat_libyat_la_SOURCES += yat/omic/BamHeader.cc
     25yat_libyat_la_SOURCES += yat/omic/BamRead.cc
     26yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc
     27yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc
     28endif
    2229yat_libyat_la_SOURCES += yat/omic/Codon.cc
    2330yat_libyat_la_SOURCES += yat/omic/DNA.cc
     
    2734yat_libyat_la_SOURCES += yat/omic/GFF3.cc
    2835
     36if HAVE_SAMTOOLS
     37nobase_include_HEADERS += $(srcdir)/yat/omic/BamFile.h
     38nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h
     39nobase_include_HEADERS += $(srcdir)/yat/omic/BamRead.h
     40nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h
     41nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h
     42endif
    2943nobase_include_HEADERS += $(srcdir)/yat/omic/Codon.h
    3044nobase_include_HEADERS += $(srcdir)/yat/omic/DNA.h
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